# Simulation and MCMC inference in landscape genetics

## Documentation for package `Geneland' version 1.0.5

## Help Pages

Geneland-package | Simulation and inference of a spatial statistical model for landscape genetics.
FormatGenotypes | Formatting file of genotype data.
Fstat | F statistics
Geneland | Simulation and inference of a spatial statistical model for landscape genetics.
mcmcFmodel | Inference in a spatial statistical model
PlotDrift | Plot the drift factors
PlotFreq | Plot the trace of allele frequencies in present time population and optionnaly print it.
PlotFreqA | Plots allele frequencies in ancestral population along the MCMC run and optionally prints it
Plotnpop | Plot of number of populations along the MCMC run
Plotntile | Plot of number of tiles along the MCMC run
PlotTessellation | Maps of posterior probability of membership
PosteriorMode | Map of mode of posterior distribution of population membership
PostProcessChain | Computation for maps of posterior probability of population membership
setplot | Set graphical parameters for geographical maps so as to have equal ratio for horizontal and vertical axis. Internal function.
simFmodel | Simulation of multi-locus genetic data from the spatial F-model