\HeaderA{Fstat}{F statistics}{Fstat}
\begin{Description}\relax
Computes F statistics according to Weir and Cockerham's 
estimators.
\end{Description}
\begin{Usage}
\begin{verbatim}
Fstat(genotypes,allele.numbers, path.mcmc)
\end{verbatim}
\end{Usage}
\begin{Arguments}
\begin{ldescription}
\item[\code{genotypes}] Genotypes of individuals. A matrix with one line per
individual and 2 columns per locus
\item[\code{allele.numbers}] A vector of integer containing the number of possible
allele for each locus
\item[\code{path.mcmc}] Path to output files directory 
\end{ldescription}
\end{Arguments}
\begin{Value}
A list with components 
\begin{ldescription}
\item[\code{Total.Fit }] A real number estimating the total Fit
\item[\code{Pairwise.Fis }] A matrix of real numbers estimating the pairwise Fis
\item[\code{Pairwise.Fst }] A matrix of real numbers estimating the pairwise Fst
\item[\code{Pairwise.Fit }] A matrix of real numbers estimating the pairwise Fit
\end{ldescription}
\end{Value}
\begin{Author}\relax
Arnaud Estoup for original code in Turbo Pascal.

Translation in Fortran and interface with R by Gilles Guillot
\end{Author}
\begin{References}\relax
Weir, B.S. and C.C. Cockerham, 
Estimating F-statistics for the analysis of population structure,
Evolution, 1984,
vol. 38, 1358-1370.
\end{References}

