Fstat {Geneland} | R Documentation

## F statistics

### Description

Computes F statistics according to Weir and Cockerham's estimators.

### Usage

    Fstat(genotypes,allele.numbers, path.mcmc)

### Arguments

`genotypes` | Genotypes of individuals. A matrix with one line per individual and 2 columns per locus
`allele.numbers` | A vector of integer containing the number of possible allele for each locus
`path.mcmc` | Path to output files directory

### Value

A list with components

`Total.Fit` | A real number estimating the total Fit
`Pairwise.Fis` | A matrix of real numbers estimating the pairwise Fis
`Pairwise.Fst` | A matrix of real numbers estimating the pairwise Fst
`Pairwise.Fit` | A matrix of real numbers estimating the pairwise Fit

### Author(s)

Arnaud Estoup for original code in Turbo Pascal.

Translation in Fortran and interface with R by Gilles Guillot

### References

Weir, B.S. and C.C. Cockerham, Estimating F-statistics for the analysis of population structure, Evolution, 1984, vol. 38, 1358-1370.

[Package Geneland version 1.0.5 Index]