chmod -R 777 for ftp access (all folders incl new downloads)

raw fastqs URL:

ftp://cbsuftp.biohpc.cornell.edu/cbsugg/jkg47/RSC_dataDistribution/GIW/2023/testRun1/Fastq/
need config file with list of sample names (col1) and filenames (col2):
testPool1_QC_pipeline_template_single_end_N2.xlsx

preprocessing: trim off 5' adapter (=PCR1 FOR primer) and quality trimming
After preprocessing, download the results (tar.gz file) to GG and unpack
nohup wget -O results.tar.gz "https://nephele.niaid.nih.gov/result_link/50441156a7df" &
tar -xzf results.tar.gz

processed fastqs URL:
ftp://cbsuftp.biohpc.cornell.edu/cbsugg/jkg47/RSC_dataDistribution/GIW/2023/testRun1/Nephele-preprocess/outputs/qtrimmed_seqs/
config:
testPool1_QIIME2_16S_pipeline_template_single_end.xlsx

nohup wget -O results.tar.gz "https://nephele.niaid.nih.gov/result_link/730cbe0e4737" &