SampleNumber 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 SampleName None H23rpt-trnL9-1 H23rpt-trnL9-3 H23rpt-trnL9-5 H23rpt-trnL9-7 H23rpt-trnL9-9 H23rpt-trnL9-11 H23rpt-trnL9-13 H23rpt-trnL9-PCR2NTC H23rpt-trnL9-2 H23rpt-trnL9-4 H23rpt-trnL9-6 H23rpt-trnL9-8 H23rpt-trnL9-10 H23rpt-trnL9-12 H23rpt-trnL9-14 H23rpt-16S-1 H23rpt-16S-3 H23rpt-16S-5 H23rpt-16S-7 H23rpt-16S-9 H23rpt-16S-11 H23rpt-16S-13 H23rpt-16S-PCR2NTC H23rpt-16S-2 H23rpt-16S-4 H23rpt-16S-6 H23rpt-16S-8 H23rpt-16S-10 H23rpt-16S-12 H23rpt-16S-14 Empty R23rpt-16S-1 R23rpt-16S-2 R23rpt-16S-3 R23rpt-16S-4 R23rpt-16S-5 R23rpt-16S-6 R23rpt-16S-7 R23rpt-16S-8 R23rpt-16S-9 R23rpt-16S-10 R23rpt-16S-11 R23rpt-16S-12 R23rpt-16S-13 R23rpt-16S-14 R23rpt-16S-15 R23rpt-16S-16 R23rpt-16S-17 R23rpt-16S-18 R23rpt-16S-19 R23rpt-16S-20 R23rpt-16S-21 R23rpt-16S-22 R23rpt-16S-23 R23rpt-16S-24 R23rpt-16S-25 R20rpt-16S-4 R20rpt-16S-6 R20rpt-16S-8 R20rpt-16S-9 R20rpt-16S-16 R20rpt-16S-17 R23rpt-16S-NTC L1T1101 80.89733 0.02211655 0.04523841 0.1337046 0.009047681 0.01709007 0.01306887 0.1367205 0 0.04121722 0.07137615 0.01005298 0.005026489 0.07037085 0.001005298 0.003015894 0.2040755 0.6031787 0.5388397 0.3478331 1.147045 0.1296834 0.5177284 0 0.1326993 0.5307973 0.8082595 0.4262463 0.7770953 0.05328079 0.06836026 0 0.2171444 0.4855589 0.5227549 0.2010596 0.5187337 0.6936556 0.4895801 0.06433906 0.2302132 0.2201602 0.4332834 0.4403205 0.5619615 0.6303218 0.9228635 0.06132317 0.09349271 0.4704794 0.5921205 0.3448172 0.4634424 0.2020649 0.4644476 0.04021192 0.06634966 0.6795814 0.597147 0.06232847 0.1065616 1.257628 0.08846622 0.01608477 L1T1102 95.12241 0.01376183 0.02948963 0.08257097 0.002621301 0.006553252 0.01834911 0.1114053 0 0.01376183 0.07667305 0.003931951 0.007863902 0.05046004 0 0.002621301 0.04521744 0.189389 0.1205798 0.07732837 0.2503342 0.01179585 0.1277884 0 0.04063016 0.1192692 0.1939763 0.108784 0.2208446 0.005242602 0.008519228 0 0.04521744 0.1218905 0.104852 0.06356654 0.1408949 0.1546567 0.1179585 0.01179585 0.05308134 0.03669821 0.1166479 0.1041967 0.1133713 0.1408949 0.2405043 0.01965976 0.02424703 0.1015754 0.1598993 0.0963328 0.1002648 0.03538756 0.1074733 0.004587276 0.007208577 0.1481035 0.1363076 0.01638313 0.03342158 0.3558416 0.02293638 0.001965976 L1T1103 46.97683 0.01367262 0.03266236 0.07595898 0.01063426 0.009874668 0.01595139 0.09950627 0 0.03190277 0.08583365 0.006076719 0.009874668 0.03797949 0.00151918 0.003797949 0.7390809 2.421572 2.322826 1.596658 4.268895 0.77782 2.35093 0.00151918 0.6562856 2.331181 3.206988 1.99924 3.002659 0.638815 0.4823395 0 0.4770224 1.014052 1.141664 0.5263957 1.011014 1.328523 1.069502 0.1663502 0.5150019 0.5742499 0.7641473 0.8530194 1.137866 1.338397 1.958982 0.1731865 0.2423092 0.9859476 1.292822 0.92594 1.020129 0.5043676 0.9312571 0.08659324 0.1526776 1.364223 1.385492 0.1291303 0.2263578 2.234713 0.2255982 0.03418154 L1T1104 98.20698 0.008478983 0.01978429 0.05765709 0.001130531 0.003391593 0.009044249 0.06330974 0 0.007913718 0.03391593 0.001695797 0.005652656 0.02882854 0 0 0.01300111 0.04861284 0.03222014 0.02430642 0.07235399 0.00508739 0.03843806 0 0.007913718 0.02204536 0.06161395 0.01921903 0.05539602 0.001130531 0.002826328 0 0.02034956 0.0508739 0.03843806 0.02430642 0.05935288 0.0672666 0.0542655 0.007913718 0.01695797 0.01074005 0.04352545 0.02882854 0.06444027 0.06613607 0.1017478 0.007348452 0.01017478 0.04522125 0.0508739 0.03165487 0.03391593 0.01017478 0.02939381 0.002261062 0.001695797 0.05539602 0.05765709 0.00508739 0.009044249 0.1328374 0.009044249 0.001130531 L1T1105 64.80479 0.007498313 0.01749606 0.05623735 0.001874578 0.004998875 0.003749156 0.06561024 0 0.01499663 0.04811417 0.004998875 0.005623735 0.02561923 0.001874578 0 0.3861631 1.285336 1.278462 0.7373341 2.018296 0.1918318 1.159114 0.001874578 0.2943088 1.037267 1.513409 0.964783 1.521533 0.1118498 0.08810518 0 0.4517733 0.8947987 0.9441625 0.528631 0.8947987 1.125997 0.9104202 0.146842 0.4055338 0.4692694 0.7567047 0.7448324 0.9547852 1.187233 1.726487 0.1274713 0.2099528 0.9316654 1.127246 0.8410608 0.8604314 0.3949111 0.7479567 0.05936164 0.1056012 1.117249 1.134745 0.115599 0.2162014 2.013922 0.1812092 0.0199955 L1T1106 98.56588 0.01120028 0.02580934 0.05502747 0.0009739375 0.004382718 0.007304531 0.07645409 0 0.01947875 0.04772294 0.002921812 0.004382718 0.03067903 0 0.0009739375 0.005356656 0.01850481 0.008765437 0.008765437 0.02580934 0.0004869687 0.01022634 0 0.001947875 0.008278469 0.01606997 0.008278469 0.01120028 0 0.001460906 0 0.01899178 0.04723597 0.03019206 0.03360084 0.04967081 0.05113171 0.03798356 0.006330593 0.015583 0.01363512 0.03700962 0.04285325 0.03798356 0.05113171 0.1003156 0.002921812 0.01071331 0.03652265 0.05259262 0.02727025 0.02824419 0.01168725 0.03019206 0.001947875 0.001460906 0.0545405 0.04090537 0.002921812 0.01071331 0.1285597 0.006330593 0.0004869687 L1T1107 37.41192 0.3104956 0.7450294 1.376024 0.1920592 0.305294 0.5377656 1.514867 0.0004001232 0.5981842 1.312804 0.3393045 0.3000924 0.7902434 0.2312712 0.3032934 0.8542631 2.723639 2.590798 1.665713 4.625425 0.6666053 2.585596 0.004401356 0.7230227 2.497169 3.367837 2.17427 3.230995 0.3104956 0.2836874 0 0.4621423 1.004309 1.025916 0.5213606 0.9947064 1.345614 0.9462914 0.1608495 0.4409358 0.4273316 0.9022779 0.8534629 1.106341 1.36202 2.039028 0.1456449 0.2324716 1.044322 1.370822 0.9438907 0.970699 0.3913205 0.8598648 0.07282243 0.1068329 1.348815 1.425639 0.1380425 0.2396738 2.367929 0.1520468 0.02360727 L1T1108 98.2834 0.009018894 0.009018894 0.03707768 0.001002099 0.003006298 0.005010497 0.06213016 0 0.01302729 0.03206718 0.004509447 0.004509447 0.01703569 0.0005010497 0 0.01302729 0.04309027 0.03156613 0.02054304 0.04759972 0.001503149 0.03908188 0 0.009018894 0.01803779 0.05711967 0.01603359 0.04910287 0.0005010497 0.001002099 0 0.02405038 0.04609657 0.04359132 0.04459342 0.04910287 0.06513646 0.05411337 0.006012596 0.01202519 0.01302729 0.04359132 0.04810077 0.05160812 0.05711967 0.09620154 0.006513646 0.005511547 0.04559552 0.05661862 0.03306928 0.02605458 0.01052204 0.03657663 0.001002099 0.003507348 0.06313226 0.05311127 0.004509447 0.009519944 0.1523191 0.009018894 0.0005010497 L1T1109 37.77391 0.3231884 0.7753623 1.347826 0.1938406 0.3278986 0.5753623 1.450725 0 0.582971 1.330435 0.3880435 0.342029 0.7978261 0.2101449 0.3224638 0.8373188 2.688406 2.568116 1.693116 4.415217 0.7927536 2.577536 0.005072464 0.7246377 2.434058 3.303623 2.099638 3.180435 0.3481884 0.3043478 0 0.4623188 0.9858696 1.007971 0.5358695 0.9956522 1.343841 0.9257246 0.1481884 0.4460145 0.4293478 0.868116 0.8373188 1.09529 1.406159 2.05471 0.1467391 0.2268116 1.05 1.330435 0.9478261 0.9891304 0.4184783 0.8394927 0.06956521 0.1054348 1.362319 1.361232 0.1318841 0.2431159 2.312681 0.190942 0.01702899 L1T1110 98.48661 0.005022321 0.009486607 0.02455357 0.001116071 0.002232143 0.002232143 0.03515625 0 0.006138393 0.02120536 0.001674107 0.002232143 0.01395089 0.0005580357 0 0.015625 0.04966518 0.03180804 0.01953125 0.04073661 0.0005580357 0.02734375 0 0.0078125 0.01729911 0.05078125 0.01729911 0.04520089 0.0005580357 0.0005580357 0 0.02232143 0.04296875 0.03850446 0.046875 0.04408482 0.06473214 0.05691964 0.007254464 0.01116071 0.006138393 0.03292411 0.03794643 0.04296875 0.05133929 0.08984375 0.008370535 0.006138393 0.03738839 0.05078125 0.02734375 0.0234375 0.005022321 0.04017857 0.002232143 0.002232143 0.05189732 0.04296875 0.005580357 0.01060268 0.1489955 0.00390625 0 L1T1111 46.21606 0.288557 0.6879199 1.261956 0.1650546 0.2877875 0.5174789 1.430858 0.0003847427 0.5467193 1.258108 0.3058704 0.2912502 0.7029248 0.194295 0.2797079 0.7171603 2.363859 2.184953 1.331594 3.789715 0.5255585 2.170718 0.004616912 0.6228983 2.040675 2.849404 1.752118 2.740137 0.1842917 0.2066068 0 0.4247559 0.8779827 0.8618235 0.4639996 0.8668252 1.192702 0.7814123 0.1238871 0.3716614 0.3370346 0.7952631 0.7363974 0.9726294 1.190009 1.783282 0.1350447 0.2035289 0.9287688 1.18039 0.8141155 0.7933393 0.3101026 0.7329347 0.06155882 0.07771801 1.191163 1.266573 0.1173465 0.2177643 2.090307 0.1577445 0.02269982 L1T1112 98.61465 0.003732657 0.005865603 0.01813005 0.0005332367 0.00159971 0.001066473 0.03252744 0 0.00959826 0.01386415 0.0005332367 0.002666183 0.01173121 0 0 0.007998549 0.02559536 0.02132947 0.007465313 0.0378598 0.001066473 0.02346241 0 0.00639884 0.01759681 0.0378598 0.0159971 0.03679333 0.0005332367 0.001066473 0 0.01972976 0.04585835 0.03306067 0.03999275 0.05279043 0.05545661 0.04105922 0.005332367 0.01866328 0.01333092 0.03359391 0.04105922 0.04905777 0.05332366 0.09651583 0.00639884 0.00639884 0.03892627 0.06078898 0.02826154 0.02559536 0.009065023 0.02506212 0.0005332367 0.002132947 0.05172395 0.04585835 0.002666183 0.01119797 0.1221112 0.005332367 0.00159971 L1T1113 73.78933 0.3355159 0.7193609 1.395969 0.1654344 0.2890455 0.5488148 1.568374 0 0.6231673 1.384352 0.3708334 0.2825397 0.7597901 0.2095813 0.3410923 0.3025219 1.005618 0.7978958 0.4484388 1.508892 0.0943348 0.8815424 0.00139411 0.2453634 0.6459378 1.160829 0.6078321 1.178488 0.04321742 0.03810568 0 0.1654344 0.3090278 0.2936926 0.1440581 0.3624687 0.4851504 0.3006631 0.05204679 0.1087406 0.09851713 0.2755691 0.294622 0.3536393 0.4702799 0.7230785 0.0539056 0.07853489 0.3517805 0.44658 0.2825397 0.2927632 0.07481726 0.2690633 0.01487051 0.01208229 0.4261331 0.4344977 0.04879386 0.08736425 0.8787542 0.06273497 0.004182331 L1T1114 99.00467 0.003235094 0.003774277 0.01294038 0.001617547 0.0005391824 0.00215673 0.02264566 0 0.006470188 0.0124012 0 0.002695912 0.0091661 0 0 0.003235094 0.02641994 0.01779302 0.01132283 0.03181176 0.001078365 0.01725384 0 0.006470188 0.01078365 0.03612522 0.01078365 0.02641994 0.0005391824 0 0 0.0091661 0.03127258 0.02264566 0.02372403 0.03558604 0.04097786 0.02965503 0.004313459 0.01078365 0.0091661 0.02534157 0.02803748 0.02641994 0.0366644 0.05553579 0.005391824 0.005391824 0.0307334 0.03774277 0.0183322 0.01887138 0.008087736 0.02426321 0.0005391824 0.001617547 0.03828195 0.0307334 0.003774277 0.007009371 0.09435692 0.00215673 0.001078365 L1T1115 98.89752 0.003652612 0.006087687 0.02008937 0.0006087687 0.001217537 0 0.02495952 0 0.007913993 0.01582799 0 0.001826306 0.006087687 0 0.001217537 0.01339291 0.03591735 0.02678582 0.01826306 0.04200504 0.002435075 0.02435075 0 0.003043843 0.01339291 0.0389612 0.01156661 0.04200504 0 0.001826306 0 0.01461045 0.03226474 0.0213069 0.01521922 0.0389612 0.03591735 0.03287351 0.002435075 0.0097403 0.007913993 0.02800336 0.02982967 0.0213069 0.03774366 0.06513825 0.006696456 0.006087687 0.02739459 0.03469982 0.02313321 0.01582799 0.007305224 0.02739459 0.0006087687 0.001826306 0.03652612 0.03530858 0.00487015 0.01034907 0.1016644 0.005478919 0.0006087687 L1T1116 97.81258 0.002046873 0.003411456 0.009552076 0 0.0006822911 0.0006822911 0.02115102 0 0.002046873 0.01296353 0.0006822911 0.0006822911 0.004776038 0 0 0.007505203 0.02933852 0.02251561 0.009552076 0.04230205 0.002046873 0.01501041 0 0.004776038 0.009552076 0.04366663 0.01432811 0.04025518 0.0006822911 0.002046873 0 0.03752601 0.06413537 0.06481766 0.02660935 0.09552076 0.1112135 0.07232286 0.01432811 0.03957289 0.03002081 0.06754682 0.06754682 0.07573432 0.1043905 0.1637499 0.008187493 0.01228124 0.08051036 0.08255722 0.06481766 0.05935933 0.02592706 0.06208849 0.004093747 0.008187493 0.1064374 0.09961451 0.01023437 0.01910415 0.1924061 0.01159895 0.002729164 ### Most Popular Index Sequences ### Columns: Sequence ReverseComplement HitCount Index AGAAGTTA TAACTTCT 162929 GGGGGGGG CCCCCCCC 147983 AAACTGGT ACCAGTTT 125172 CAATACTT AAGTATTG 113947 TTTAACAG CTGTTAAA 94195 AAATCAGA TCTGATTT 92912 GTTTGTTT AAACAAAC 92881 TTCCGCTC GAGCGGAA 92314 GGAAACAG CTGTTTCC 80526 GTCTCCAA TTGGAGAC 75569 CAGACCAT ATGGTCTG 69242 TTAAGCGT ACGCTTAA 67382 TTCGGCCT AGGCCGAA 53716 CATACATT AATGTATG 52815 GTTACGAT ATCGTAAC 49537 ATGTTGGC GCCAACAT 49352 GAGCGGTA TACCGCTC 48829 GGTCATAA TTATGACC 48798 TTCCAGAC GTCTGGAA 48226 AGGCAACG CGTTGCCT 47848 TGATAACA TGTTATCA 46388 GCCAAGAT ATCTTGGC 40651 GTATGAGT ACTCATAC 39150 ACCTTCTT AAGAAGGT 38990 TAGTCGCA TGCGACTA 37289 ATCCCACG CGTGGGAT 36162 ATTTCCGG CCGGAAAT 35757 GCTTTGGC GCCAAAGC 33432 GTACACTC GAGTGTAC 33383 CGGGCTTT AAAGCCCG 32992 GAAGGCTT AAGCCTTC 32823 GGCATGCT AGCATGCC 30856 ATATGCAT ATGCATAT 30556 AAATCGTT AACGATTT 30338 TTATAGCC GGCTATAA 29625 TTGTGACT AGTCACAA 27329 AGGTTGTG CACAACCT 26154 CGAACGTA TACGTTCG 21779 TGGCTACC GGTAGCCA 20422 GGGAACCT AGGTTCCC 20069 CCCTTCAG CTGAAGGG 19124 GACAAAGG CCTTTGTC 18063 GTTGTCAT ATGACAAC 17615 AACAATCC GGATTGTT 17434 GAGGCTGA TCAGCCTC 17002 AAATGTCG CGACATTT 12426 TGTGTCCT AGGACACA 11742 CTGGTGCA TGCACCAG 10574 TGCGTATC GATACGCA 10010 ATTTGTTT AAACAAAT 9505 GCAACCTG CAGGTTGC 8314 TCGTCATG CATGACGA 8213 TCCTTATT AATAAGGA 7415 AACCCTTG CAAGGGTT 7290 TCCTAGAA TTCTAGGA 6700 TAGTGGAC GTCCACTA 5697 ACGTATAC GTATACGT 5616 AGCATGCT AGCATGCT 5607 ATCTCCAA TTGGAGAT 5526 CTCGCGTA TACGCGAG 5508 AGTGATGC GCATCACT 5432 CACGGACT AGTCCGTG 4401 AGAAGTTT AAACTTCT 4035 ACTTTGGC GCCAAAGT 3605 GACAACTT AAGTTGTC 3285 TTCCGCTT AAGCGGAA 3149 TAATACTT AAGTATTA 2995 AAGCGGTA TACCGCTT 2825 TTTTACAG CTGTAAAA 2736 TTTAGCGT ACGCTAAA 2678 TTTTACTT AAGTAAAA 2642 AAATCTGA TCAGATTT 2561 ATACACTC GAGTGTAT 2390 GTTACGGT ACCGTAAC 2267 GTCTCCTA TAGGAGAC 2266 CTATACTT AAGTATAG 2120 ATATGAGT ACTCATAT 2087 CAATTCTT AAGAATTG 2062 AAAGGCTT AAGCCTTT 2010 AGTCATAA TTATGACT 1984 CAAACATT AATGTTTG 1907 TTTTATTT AAATAAAA 1903 GGGAGGGG CCCCTCCC 1802 AGAAACAG CTGTTTCT 1786 TTTTGTTT AAACAAAA 1775 GTTTATTT AAATAAAC 1762 TTTTTCTT AAGAAAAA 1706 AGGCAGCG CGCTGCCT 1642 GGAAGTTA TAACTTCC 1635 TAATTCTT AAGAATTA 1629 ATTACGAT ATCGTAAT 1621 TTTTGCTT AAGCAAAA 1594 CAGACCTT AAGGTCTG 1584 TTTAACTG CAGTTAAA 1488 GTTATCAT ATGATAAC 1463 GTACACTT AAGTGTAC 1435 CAAACCAT ATGGTTTG 1414 GGAAGCAG CTGCTTCC 1386 ATATTGGC GCCAATAT 1363 TGAAGTTA TAACTTCA 1341 Index2 TTGGCGTT AACGCCAA 369013 GTTTACGT ACGTAAAC 345820 TTCCCCTT AAGGGGAA 239291 CTTTTTCT AGAAAAAG 157235 TTGATCTA TAGATCAA 124161 GCTTACGC GCGTAAGC 70324 CTTTTTTT AAAAAAAG 65529 TTTTTTTT AAAAAAAA 61211 GCCCACGC GCGTGGGC 57023 CCGGCGCC GGCGCCGG 53114 TTGGCGTC GACGCCAA 43587 TCGGCGCC GGCGCCGA 42637 GGGGGGGG CCCCCCCC 42631 TTTTTCTT AAGAAAAA 39365 CCGGGCCG CGGCCCGG 37949 GGTTACGC GCGTAACC 36437 TCGGCGTC GACGCCGA 35837 GTTTACCT AGGTAAAC 34436 TTTTTTCT AGAAAAAA 34377 GTTTACGC GCGTAAAC 33202 GCCCGCGC GCGCGGGC 28666 GCCTACGC GCGTAGGC 23139 CTTTTCTT AAGAAAAG 22192 CCGGCGTC GACGCCGG 21549 TTGCCGTT AACGGCAA 20573 GTTTACTT AAGTAAAC 20371 TGGGCGTC GACGCCCA 19934 TTGACGTT AACGTCAA 19111 TTCCTCTC GAGAGGAA 18391 TTGATCTG CAGATCAA 18244 TTTTCTTT AAAGAAAA 16916 CCCCTCCC GGGAGGGG 14591 CCCCGCCC GGGCGGGG 14022 GTTTTCGT ACGAAAAC 13392 GGCCACGC GCGTGGCC 12432 TTGGCGCT AGCGCCAA 11518 CGGGCGTC GACGCCCG 10856 TTCCTTTC GAAAGGAA 9980 GGTTACGT ACGTAACC 9875 TTTATCTT AAGATAAA 8833 TCGGGCCG CGGCCCGA 8405 GTTTTCTT AAGAAAAC 8156 TTGATCTT AAGATCAA 8073 CTTTACTT AAGTAAAG 7934 GCTTACGT ACGTAAGC 7594 CTTTTCCT AGGAAAAG 7516 GGCCGCGC GCGCGGCC 7240 CTTTACGT ACGTAAAG 7223 CCGGGGCC GGCCCCGG 6823 GTTTATGT ACATAAAC 6765 TTGGCGGT ACCGCCAA 6733 GGGGGGGC GCCCCCCC 6378 CGGGGGGG CCCCCCCG 6323 TTGGGCTG CAGCCCAA 6244 TTCCTCTT AAGAGGAA 6030 GCTCACGC GCGTGAGC 5960 CTTTATCT AGATAAAG 5774 TTTGCGTT AACGCAAA 5588 CCGGGCTG CAGCCCGG 5585 TTTTACTT AAGTAAAA 5528 GGCCGCGG CCGCGGCC 5515 GGTTACGG CCGTAACC 5351 GTTTTTCT AGAAAAAC 5242 CTTTTTGT ACAAAAAG 5166 TGGGCGGC GCCGCCCA 5153 TTTCCCTT AAGGGAAA 5061 TTCCCGTT AACGGGAA 5012 CGGGGCGG CCGCCCCG 4750 GTGGCGGT ACCGCCAC 4746 CCGGGGGG CCCCCCGG 4700 GTTAACGT ACGTTAAC 4685 TTTACCTT AAGGTAAA 4680 TTGACCTT AAGGTCAA 4653 TCCCTCCC GGGAGGGA 4631 TTTTCCTT AAGGAAAA 4481 CCGGGGGC GCCCCCGG 4437 GGTAACGC GCGTTACC 4417 TTCGCGTT AACGCGAA 4394 CCGGGCGG CCGCCCGG 4345 CCGGCGGC GCCGCCGG 4220 CGGGGCTG CAGCCCCG 4115 CCGGGGTG CACCCCGG 4071 TTGGACCG CGGTCCAA 3979 TTTCCGTT AACGGAAA 3914 TGGGGCTG CAGCCCCA 3888 CCCCCCCC GGGGGGGG 3886 GGGAACGG CCGTTCCC 3880 GGGGGCGG CCGCCCCC 3855 TGGGGGGG CCCCCCCA 3763 TTGATCTC GAGATCAA 3742 GGGGGGCG CGCCCCCC 3685 TGGATCTG CAGATCCA 3668 CCGGTCCG CGGACCGG 3661 TTGGTCTG CAGACCAA 3585 TTTCTCTT AAGAGAAA 3548 TTGAACTA TAGTTCAA 3463 GTTATCGT ACGATAAC 3436 GGGAGGGG CCCCTCCC 3428 TTCCTTTT AAAAGGAA 3416 TTTTACCT AGGTAAAA 3333 ### Most Popular Index Pairs ### Columns: Index1_Sequence Index1_ReverseComplement Index2_Sequence Index2_ReverseComplement HitCount AGAAGTTA TAACTTCT GTTTACGT ACGTAAAC 47826 AAACTGGT ACCAGTTT GTTTACGT ACGTAAAC 35796 CAATACTT AAGTATTG GTTTACGT ACGTAAAC 34555 GGAAACAG CTGTTTCC TTGGCGTT AACGCCAA 29507 TTTAACAG CTGTTAAA GTTTACGT ACGTAAAC 29167 AAATCAGA TCTGATTT GTTTACGT ACGTAAAC 27129 TTCCGCTC GAGCGGAA GTTTACGT ACGTAAAC 27128 GTTTGTTT AAACAAAC GTTTACGT ACGTAAAC 25304 CAGACCAT ATGGTCTG TTGGCGTT AACGCCAA 24955 GGGGGGGG CCCCCCCC TTGATCTA TAGATCAA 23987 GTCTCCAA TTGGAGAC GTTTACGT ACGTAAAC 22061 AGAAGTTA TAACTTCT CTTTTTCT AGAAAAAG 19417 TTAAGCGT ACGCTTAA GTTTACGT ACGTAAAC 17224 GGAAACAG CTGTTTCC TTCCCCTT AAGGGGAA 16775 GAGCGGTA TACCGCTC TTGGCGTT AACGCCAA 16705 GGTCATAA TTATGACC TTGGCGTT AACGCCAA 16705 TGATAACA TGTTATCA TTGGCGTT AACGCCAA 16565 TTCCAGAC GTCTGGAA TTGGCGTT AACGCCAA 16443 AGGCAACG CGTTGCCT TTGGCGTT AACGCCAA 16230 CATACATT AATGTATG TTGATCTA TAGATCAA 16057 AAACTGGT ACCAGTTT CTTTTTCT AGAAAAAG 15676 CAATACTT AAGTATTG CTTTTTCT AGAAAAAG 14524 GGGGGGGG CCCCCCCC GGGGGGGG CCCCCCCC 14408 GTTACGAT ATCGTAAC TTGATCTA TAGATCAA 14330 TTCGGCCT AGGCCGAA TTGATCTA TAGATCAA 13934 CAGACCAT ATGGTCTG TTCCCCTT AAGGGGAA 13930 ACCTTCTT AAGAAGGT TTGGCGTT AACGCCAA 13494 TAGTCGCA TGCGACTA TTGGCGTT AACGCCAA 12697 GTTTGTTT AAACAAAC CTTTTTCT AGAAAAAG 12629 ATCCCACG CGTGGGAT TTGGCGTT AACGCCAA 12514 GTATGAGT ACTCATAC TTGGCGTT AACGCCAA 12432 ATTTCCGG CCGGAAAT TTGGCGTT AACGCCAA 12261 TTTAACAG CTGTTAAA CTTTTTCT AGAAAAAG 11937 GCTTTGGC GCCAAAGC TTGGCGTT AACGCCAA 11806 GTACACTC GAGTGTAC TTGGCGTT AACGCCAA 11590 AAATCAGA TCTGATTT CTTTTTCT AGAAAAAG 11534 TTCCGCTC GAGCGGAA CTTTTTCT AGAAAAAG 11472 GAAGGCTT AAGCCTTC TTGGCGTT AACGCCAA 11201 GGCATGCT AGCATGCC TTGGCGTT AACGCCAA 10691 CGGGCTTT AAAGCCCG TTGGCGTT AACGCCAA 10486 AAATCGTT AACGATTT TTGGCGTT AACGCCAA 10484 GGTCATAA TTATGACC TTCCCCTT AAGGGGAA 10039 GAGCGGTA TACCGCTC TTCCCCTT AAGGGGAA 9879 AGAAGTTA TAACTTCT GCTTACGC GCGTAAGC 9784 TTCCAGAC GTCTGGAA TTCCCCTT AAGGGGAA 9663 AGGCAACG CGTTGCCT TTCCCCTT AAGGGGAA 9446 TGATAACA TGTTATCA TTCCCCTT AAGGGGAA 9401 GTCTCCAA TTGGAGAC CTTTTTCT AGAAAAAG 9323 ATGTTGGC GCCAACAT GGGGGGGG CCCCCCCC 9051 AGAAGTTA TAACTTCT GCCCACGC GCGTGGGC 8995 TTATAGCC GGCTATAA GTTTACGT ACGTAAAC 8966 GTATGAGT ACTCATAC TTCCCCTT AAGGGGAA 8205 GGGGGGGG CCCCCCCC CCGGGCCG CGGCCCGG 8143 ATATGCAT ATGCATAT TTGATCTA TAGATCAA 8106 CAATACTT AAGTATTG GCTTACGC GCGTAAGC 8045 ACCTTCTT AAGAAGGT TTCCCCTT AAGGGGAA 7816 AGAAGTTA TAACTTCT CTTTTTTT AAAAAAAG 7757 TTGTGACT AGTCACAA TTGATCTA TAGATCAA 7655 TAGTCGCA TGCGACTA TTCCCCTT AAGGGGAA 7651 AGGTTGTG CACAACCT GTTTACGT ACGTAAAC 7569 AAACTGGT ACCAGTTT GCTTACGC GCGTAAGC 7559 ATCCCACG CGTGGGAT TTCCCCTT AAGGGGAA 7479 TTAAGCGT ACGCTTAA CTTTTTCT AGAAAAAG 7433 GCTTTGGC GCCAAAGC TTCCCCTT AAGGGGAA 7229 ATTTCCGG CCGGAAAT TTCCCCTT AAGGGGAA 7159 TTTAACAG CTGTTAAA GCTTACGC GCGTAAGC 7052 GCCAAGAT ATCTTGGC GTTTACGT ACGTAAAC 6926 CGGGCTTT AAAGCCCG TTCCCCTT AAGGGGAA 6824 GGCATGCT AGCATGCC TTCCCCTT AAGGGGAA 6755 GTACACTC GAGTGTAC TTCCCCTT AAGGGGAA 6711 GTTGTCAT ATGACAAC TTGGCGTT AACGCCAA 6602 GAAGGCTT AAGCCTTC TTCCCCTT AAGGGGAA 6549 GGGGGGGG CCCCCCCC CCCCGCCC GGGCGGGG 6490 TTCCGCTC GAGCGGAA GCTTACGC GCGTAAGC 6133 CGAACGTA TACGTTCG TTGATCTA TAGATCAA 6131 AAACTGGT ACCAGTTT CTTTTTTT AAAAAAAG 6106 AAATCGTT AACGATTT TTCCCCTT AAGGGGAA 6029 AAATCAGA TCTGATTT GCTTACGC GCGTAAGC 5837 GAGGCTGA TCAGCCTC TTGGCGTT AACGCCAA 5823 CAATACTT AAGTATTG CTTTTTTT AAAAAAAG 5696 CCCTTCAG CTGAAGGG TTGATCTA TAGATCAA 5578 AAACTGGT ACCAGTTT GCCCACGC GCGTGGGC 5440 AACAATCC GGATTGTT TTGGCGTT AACGCCAA 5405 TGGCTACC GGTAGCCA TTGGCGTT AACGCCAA 5306 GTTTGTTT AAACAAAC CTTTTTTT AAAAAAAG 5069 AGAAGTTA TAACTTCT GGTTACGC GCGTAACC 5018 CAATACTT AAGTATTG GCCCACGC GCGTGGGC 5001 TTCGGCCT AGGCCGAA CCGGGCCG CGGCCCGG 4896 TGGCTACC GGTAGCCA TTCCCCTT AAGGGGAA 4861 GTTTGTTT AAACAAAC GCTTACGC GCGTAAGC 4840 AGAAGTTA TAACTTCT GTTTACGC GCGTAAAC 4820 GGGAACCT AGGTTCCC TTGGCGTT AACGCCAA 4805 GTCTCCAA TTGGAGAC GCTTACGC GCGTAAGC 4732 AAATCAGA TCTGATTT GCCCACGC GCGTGGGC 4719 TTTAACAG CTGTTAAA CTTTTTTT AAAAAAAG 4675 GGGGGGGG CCCCCCCC CCCCTCCC GGGAGGGG 4618 AAATCAGA TCTGATTT CTTTTTTT AAAAAAAG 4525 TTCCGCTC GAGCGGAA GCCCACGC GCGTGGGC 4460 GGGAACCT AGGTTCCC TTCCCCTT AAGGGGAA 4417 CATACATT AATGTATG CCGGGCCG CGGCCCGG 4261 TTCCGCTC GAGCGGAA CTTTTTTT AAAAAAAG 4219 GTTTGTTT AAACAAAC GCCCACGC GCGTGGGC 4159 GTTGTCAT ATGACAAC TTCCCCTT AAGGGGAA 4158 AGAAGTTA TAACTTCT TTTTTTCT AGAAAAAA 4110 GGGGGGGG CCCCCCCC TTGGCGTT AACGCCAA 4081 AGAAGTTA TAACTTCT GTTTACCT AGGTAAAC 4076 AGAAGTTA TAACTTCT TTTTTTTT AAAAAAAA 4033 GTTACGAT ATCGTAAC CCGGGCCG CGGCCCGG 3957 TTTAACAG CTGTTAAA GCCCACGC GCGTGGGC 3888 TTATAGCC GGCTATAA CTTTTTCT AGAAAAAG 3814 AACAATCC GGATTGTT TTCCCCTT AAGGGGAA 3767 GTCTCCAA TTGGAGAC CTTTTTTT AAAAAAAG 3708 GTCTCCAA TTGGAGAC GCCCACGC GCGTGGGC 3643 GGAAACAG CTGTTTCC TTGGCGTC GACGCCAA 3639 AAACTGGT ACCAGTTT GGTTACGC GCGTAACC 3588 GGGGGGGG CCCCCCCC GTTTACGT ACGTAAAC 3571 TGTGTCCT AGGACACA TTGATCTA TAGATCAA 3567 GAGGCTGA TCAGCCTC TTCCCCTT AAGGGGAA 3535 GGGGGGGG CCCCCCCC TTGATCTG CAGATCAA 3510 GGAAACAG CTGTTTCC CCGGCGCC GGCGCCGG 3505 CAGACCAT ATGGTCTG CCGGCGCC GGCGCCGG 3468 AAACTGGT ACCAGTTT TTTTTTTT AAAAAAAA 3460 GGAAACAG CTGTTTCC TCGGCGCC GGCGCCGA 3413 ATGTTGGC GCCAACAT GTTTACGT ACGTAAAC 3397 AGAAGTTA TAACTTCT GCCTACGC GCGTAGGC 3369 AAACTGGT ACCAGTTT GTTTACCT AGGTAAAC 3338 CAATACTT AAGTATTG GTTTACGC GCGTAAAC 3310 TGCGTATC GATACGCA TTGATCTA TAGATCAA 3300 CAGACCAT ATGGTCTG TCGGCGCC GGCGCCGA 3266 AAACTGGT ACCAGTTT TTTTTTCT AGAAAAAA 3261 CAGACCAT ATGGTCTG TTGGCGTC GACGCCAA 3254 CAATACTT AAGTATTG TTTTTTTT AAAAAAAA 3249 AAACTGGT ACCAGTTT GTTTACGC GCGTAAAC 3243 CAATACTT AAGTATTG GGTTACGC GCGTAACC 3237 AGGTTGTG CACAACCT CTTTTTCT AGAAAAAG 3212 CTGGTGCA TGCACCAG TTGATCTA TAGATCAA 3144 TCCTTATT AATAAGGA TTGATCTA TAGATCAA 3125 AAATGTCG CGACATTT TTGATCTA TAGATCAA 3118 CAATACTT AAGTATTG TTTTTTCT AGAAAAAA 3098 TTAAGCGT ACGCTTAA GCTTACGC GCGTAAGC 3087 GGAAACAG CTGTTTCC TCGGCGTC GACGCCGA 3077 ATGTTGGC GCCAACAT CCCCTCCC GGGAGGGG 3065 GACAAAGG CCTTTGTC GTTTACGT ACGTAAAC 3044 GCCAAGAT ATCTTGGC CTTTTTCT AGAAAAAG 3005 GCAACCTG CAGGTTGC TTGGCGTT AACGCCAA 2980 CAATACTT AAGTATTG GTTTACCT AGGTAAAC 2959 TTCCGCTC GAGCGGAA GGTTACGC GCGTAACC 2923 TTAAGCGT ACGCTTAA GCCCACGC GCGTGGGC 2891 CATACATT AATGTATG TTCCTCTC GAGAGGAA 2883 TTCGGCCT AGGCCGAA TTCCTCTC GAGAGGAA 2827 GTTTGTTT AAACAAAC TTTTTTTT AAAAAAAA 2819 AGAAGTTA TAACTTCT GCCCGCGC GCGCGGGC 2814 TCGTCATG CATGACGA TTGGCGTT AACGCCAA 2802 TTTAACAG CTGTTAAA GTTTACGC GCGTAAAC 2795 CAGACCAT ATGGTCTG TCGGCGTC GACGCCGA 2783 AAATCAGA TCTGATTT GGTTACGC GCGTAACC 2779 GGTCATAA TTATGACC CCGGCGCC GGCGCCGG 2767 GTTTGTTT AAACAAAC GGTTACGC GCGTAACC 2742 TTCCGCTC GAGCGGAA GTTTACGC GCGTAAAC 2741 GTTACGAT ATCGTAAC TTCCTCTC GAGAGGAA 2721 ATATGCAT ATGCATAT CCGGGCCG CGGCCCGG 2688 TTTAACAG CTGTTAAA GGTTACGC GCGTAACC 2683 GTTTGTTT AAACAAAC TTTTTTCT AGAAAAAA 2671 GTTTGTTT AAACAAAC GTTTACCT AGGTAAAC 2626 TTCCAGAC GTCTGGAA CCGGCGCC GGCGCCGG 2607 TTAAGCGT ACGCTTAA CTTTTTTT AAAAAAAG 2571 GAGCGGTA TACCGCTC CCGGCGCC GGCGCCGG 2569 TTCCGCTC GAGCGGAA GTTTACCT AGGTAAAC 2566 AAACTGGT ACCAGTTT GCCTACGC GCGTAGGC 2537 TTTAACAG CTGTTAAA TTTTTTCT AGAAAAAA 2491 AGGCAACG CGTTGCCT CCGGCGCC GGCGCCGG 2477 TTTAACAG CTGTTAAA GTTTACCT AGGTAAAC 2458 TTCCGCTC GAGCGGAA TTTTTTCT AGAAAAAA 2456 CAATACTT AAGTATTG GCCTACGC GCGTAGGC 2455 ATTTGTTT AAACAAAT GTTTACGT ACGTAAAC 2442 GTCTCCAA TTGGAGAC GGTTACGC GCGTAACC 2422 TTGTGACT AGTCACAA CCGGGCCG CGGCCCGG 2421 AAATCAGA TCTGATTT GTTTACGC GCGTAAAC 2416 AAATCAGA TCTGATTT TTTTTTCT AGAAAAAA 2415 TGATAACA TGTTATCA CCGGCGCC GGCGCCGG 2406 AGAAGTTA TAACTTCT GTTTACTT AAGTAAAC 2401 GACAAAGG CCTTTGTC CTTTTTCT AGAAAAAG 2397 AAATCAGA TCTGATTT GTTTACCT AGGTAAAC 2389 GCCAAGAT ATCTTGGC GCCCGCGC GCGCGGGC 2384 GGGGGGGG CCCCCCCC CGGGGGGG CCCCCCCG 2336 AAATCAGA TCTGATTT TTTTTTTT AAAAAAAA 2308 TTTAACAG CTGTTAAA TTTTTTTT AAAAAAAA 2268 TCCTAGAA TTCTAGGA TTGGCGTT AACGCCAA 2256 AGAAGTTA TAACTTCT CTTTTCTT AAGAAAAG 2252 GTTTGTTT AAACAAAC GTTTACGC GCGTAAAC 2204 GGGGGGGG CCCCCCCC TTCCCCTT AAGGGGAA 2204 TTCGGCCT AGGCCGAA TTGATCTG CAGATCAA 2201 GTCTCCAA TTGGAGAC GTTTACGC GCGTAAAC 2168 GAGCGGTA TACCGCTC TCGGCGCC GGCGCCGA 2134 AGTGATGC GCATCACT TTGATCTA TAGATCAA 2122 AAACTGGT ACCAGTTT GCCCGCGC GCGCGGGC 2101 TTCCGCTC GAGCGGAA TTTTTTTT AAAAAAAA 2062 AAATCAGA TCTGATTT GCCTACGC GCGTAGGC 2061 GTCTCCAA TTGGAGAC TTTTTTCT AGAAAAAA 2058 TTTAACAG CTGTTAAA GCCTACGC GCGTAGGC 2056