[2023-04-01 05:03:09,144 - INFO] Nephele, developed by BCBB/OCICB/NIAID/NIH version: 2.23.4, tag: Nephele_2023_March_28, commit: d9e1ff4
[2023-04-01 05:03:09,144 - INFO] Python version: 3.8.13
[2023-04-01 05:03:09,144 - INFO] Current time: 2023-04-01 05:03
[2023-04-01 05:03:09,144 - INFO] Pipeline name: QC Reads
[2023-04-01 05:03:09,379 - INFO] Job Description: GIW23-testRun1
[2023-04-01 05:03:09,379 - INFO] Job parameters
job_id: 50441156a7df
inputs_dir: None
outputs_dir: None
map_file: <_io.TextIOWrapper name='/nephele_data/inputs/testPool1_QC_pipeline_template_single_end_N2_corrected.txt' mode='r' encoding='UTF-8'>
data_type: SE
run_cutadapt: True
error_rate: 0.1
indels: True
overlap: 3
match_read_wildcards: True
match_adapter_wildcards: True
adapter_f: None
adapter_r: None
front_f: GTGYCAGCMGCCGCGGTAA
front_r: None
anywhere_f: None
anywhere_r: None
run_qual_trimming: True
window_size: 4
req_qual: 12
lead_qual: 3
trail_qual: 3
minlen: 30
avg_qual: 0
run_flash2_merge: False
f2_min_overlap: 10
f2_max_overlap: 315
f2_min_overlap_outie: 35
f2_max_mismatch_density: 0.25
[2023-04-01 05:03:09,379 - INFO] Checking Mapfile for Gzipped inputs.
[2023-04-01 05:03:09,380 - INFO] Gzipped files listed in map file, attempting to rm .gz extension.
[2023-04-01 05:03:09,382 - INFO] Done. Attempting file decompression.
[2023-04-01 05:03:16,685 - INFO] Finished decompression.
[2023-04-01 05:03:16,685 - INFO] Skipping FASTQ file validation
[2023-04-01 05:03:16,685 - INFO] Starting pipe...
[2023-04-01 05:03:16,694 - INFO] Trying to generate samples
[2023-04-01 05:03:16,696 - INFO] Starting Fastqc, outputs in /nephele_data/outputs/multiqc_input/.
[2023-04-01 05:03:16,696 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/R22-00_S9_L001_R1_001.fastq
[2023-04-01 05:03:20,201 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/R22-01_S10_L001_R1_001.fastq
[2023-04-01 05:03:23,442 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/R22-02_S11_L001_R1_001.fastq
[2023-04-01 05:03:26,668 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/R22-03_S12_L001_R1_001.fastq
[2023-04-01 05:03:29,928 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/R22-06_S13_L001_R1_001.fastq
[2023-04-01 05:03:33,157 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/R22-07_S14_L001_R1_001.fastq
[2023-04-01 05:03:35,388 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/R22-08_S15_L001_R1_001.fastq
[2023-04-01 05:03:38,615 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/R22-09_S16_L001_R1_001.fastq
[2023-04-01 05:03:41,844 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/R22-10_S17_L001_R1_001.fastq
[2023-04-01 05:03:44,070 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/R22-11_S18_L001_R1_001.fastq
[2023-04-01 05:03:47,298 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/R22-12_S19_L001_R1_001.fastq
[2023-04-01 05:03:50,525 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/R22-13_S20_L001_R1_001.fastq
[2023-04-01 05:03:52,792 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/R22-14_S21_L001_R1_001.fastq
[2023-04-01 05:03:56,020 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/R22-15_S22_L001_R1_001.fastq
[2023-04-01 05:03:59,249 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/R22-51_S23_L001_R1_001.fastq
[2023-04-01 05:04:02,491 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/R22-52_S24_L001_R1_001.fastq
[2023-04-01 05:04:05,719 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/R22-53_S8_L001_R1_001.fastq
[2023-04-01 05:04:07,945 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/R22-54_S7_L001_R1_001.fastq
[2023-04-01 05:04:11,175 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/R22-55_S6_L001_R1_001.fastq
[2023-04-01 05:04:14,416 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/R22-56_S5_L001_R1_001.fastq
[2023-04-01 05:04:17,645 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/R22-60_S4_L001_R1_001.fastq
[2023-04-01 05:04:20,886 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/R22-61_S3_L001_R1_001.fastq
[2023-04-01 05:04:24,119 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/R22-W_S1_L001_R1_001.fastq
[2023-04-01 05:04:26,347 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/R22-W_S2_L001_R1_001.fastq
[2023-04-01 05:04:29,577 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-001_S25_L001_R1_001.fastq
[2023-04-01 05:04:31,836 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-002_S26_L001_R1_001.fastq
[2023-04-01 05:04:34,063 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-003_S27_L001_R1_001.fastq
[2023-04-01 05:04:36,303 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-004_S28_L001_R1_001.fastq
[2023-04-01 05:04:38,531 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-005_S29_L001_R1_001.fastq
[2023-04-01 05:04:40,762 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-006_S30_L001_R1_001.fastq
[2023-04-01 05:04:43,996 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-007_S31_L001_R1_001.fastq
[2023-04-01 05:04:46,223 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-008_S32_L001_R1_001.fastq
[2023-04-01 05:04:48,451 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-009_S33_L001_R1_001.fastq
[2023-04-01 05:04:50,687 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-010_S34_L001_R1_001.fastq
[2023-04-01 05:04:52,914 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-011_S35_L001_R1_001.fastq
[2023-04-01 05:04:55,183 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-012_S36_L001_R1_001.fastq
[2023-04-01 05:04:57,411 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-013_S37_L001_R1_001.fastq
[2023-04-01 05:04:59,640 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-014_S38_L001_R1_001.fastq
[2023-04-01 05:05:01,888 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-015_S39_L001_R1_001.fastq
[2023-04-01 05:05:04,115 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-016_S40_L001_R1_001.fastq
[2023-04-01 05:05:07,344 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-017_S41_L001_R1_001.fastq
[2023-04-01 05:05:09,582 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-018_S42_L001_R1_001.fastq
[2023-04-01 05:05:11,810 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-019_S43_L001_R1_001.fastq
[2023-04-01 05:05:14,037 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-020_S44_L001_R1_001.fastq
[2023-04-01 05:05:16,279 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-021_S45_L001_R1_001.fastq
[2023-04-01 05:05:18,505 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-022_S46_L001_R1_001.fastq
[2023-04-01 05:05:20,735 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-023_S47_L001_R1_001.fastq
[2023-04-01 05:05:22,962 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-024_S48_L001_R1_001.fastq
[2023-04-01 05:05:25,190 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-025_S49_L001_R1_001.fastq
[2023-04-01 05:05:27,416 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-026_S50_L001_R1_001.fastq
[2023-04-01 05:05:29,647 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-027_S51_L001_R1_001.fastq
[2023-04-01 05:05:31,880 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-028_S52_L001_R1_001.fastq
[2023-04-01 05:05:34,126 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-029_S53_L001_R1_001.fastq
[2023-04-01 05:05:36,354 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-030_S54_L001_R1_001.fastq
[2023-04-01 05:05:38,596 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-031_S55_L001_R1_001.fastq
[2023-04-01 05:05:40,823 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-032_S56_L001_R1_001.fastq
[2023-04-01 05:05:43,049 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-033_S57_L001_R1_001.fastq
[2023-04-01 05:05:45,279 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-034_S58_L001_R1_001.fastq
[2023-04-01 05:05:47,508 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-035_S59_L001_R1_001.fastq
[2023-04-01 05:05:49,776 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-036_S60_L001_R1_001.fastq
[2023-04-01 05:05:52,020 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-037_S61_L001_R1_001.fastq
[2023-04-01 05:05:54,249 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-038_S62_L001_R1_001.fastq
[2023-04-01 05:05:56,489 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-039_S63_L001_R1_001.fastq
[2023-04-01 05:05:58,756 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-040_S64_L001_R1_001.fastq
[2023-04-01 05:06:00,991 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-041_S65_L001_R1_001.fastq
[2023-04-01 05:06:03,220 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-042_S66_L001_R1_001.fastq
[2023-04-01 05:06:05,451 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-043_S67_L001_R1_001.fastq
[2023-04-01 05:06:07,679 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-044_S68_L001_R1_001.fastq
[2023-04-01 05:06:09,939 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-045_S69_L001_R1_001.fastq
[2023-04-01 05:06:12,167 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-046_S70_L001_R1_001.fastq
[2023-04-01 05:06:14,405 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-047_S71_L001_R1_001.fastq
[2023-04-01 05:06:16,647 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-048_S72_L001_R1_001.fastq
[2023-04-01 05:06:18,875 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-049_S73_L001_R1_001.fastq
[2023-04-01 05:06:21,106 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-050_S74_L001_R1_001.fastq
[2023-04-01 05:06:23,333 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-051_S75_L001_R1_001.fastq
[2023-04-01 05:06:26,566 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-052_S76_L001_R1_001.fastq
[2023-04-01 05:06:28,795 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-053_S77_L001_R1_001.fastq
[2023-04-01 05:06:31,022 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-054_S78_L001_R1_001.fastq
[2023-04-01 05:06:33,248 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-055_S79_L001_R1_001.fastq
[2023-04-01 05:06:35,503 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-056_S80_L001_R1_001.fastq
[2023-04-01 05:06:37,731 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-057_S81_L001_R1_001.fastq
[2023-04-01 05:06:39,958 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-058_S82_L001_R1_001.fastq
[2023-04-01 05:06:42,185 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-059_S83_L001_R1_001.fastq
[2023-04-01 05:06:44,412 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-060_S84_L001_R1_001.fastq
[2023-04-01 05:06:46,654 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-061_S85_L001_R1_001.fastq
[2023-04-01 05:06:48,924 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-062_S86_L001_R1_001.fastq
[2023-04-01 05:06:51,152 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-063_S87_L001_R1_001.fastq
[2023-04-01 05:06:53,379 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-064_S88_L001_R1_001.fastq
[2023-04-01 05:06:55,616 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-065_S89_L001_R1_001.fastq
[2023-04-01 05:06:57,843 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-066_S90_L001_R1_001.fastq
[2023-04-01 05:07:00,071 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-067_S91_L001_R1_001.fastq
[2023-04-01 05:07:02,300 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-068_S92_L001_R1_001.fastq
[2023-04-01 05:07:04,527 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-069_S93_L001_R1_001.fastq
[2023-04-01 05:07:06,766 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-070_S94_L001_R1_001.fastq
[2023-04-01 05:07:09,993 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-071_S95_L001_R1_001.fastq
[2023-04-01 05:07:12,235 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-072_S96_L001_R1_001.fastq
[2023-04-01 05:07:14,463 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-073_S97_L001_R1_001.fastq
[2023-04-01 05:07:16,690 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-074_S98_L001_R1_001.fastq
[2023-04-01 05:07:18,932 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-075_S99_L001_R1_001.fastq
[2023-04-01 05:07:21,172 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-076_S100_L001_R1_001.fastq
[2023-04-01 05:07:23,411 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-077_S101_L001_R1_001.fastq
[2023-04-01 05:07:25,669 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-078_S102_L001_R1_001.fastq
[2023-04-01 05:07:27,898 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-079_S103_L001_R1_001.fastq
[2023-04-01 05:07:30,184 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-080_S104_L001_R1_001.fastq
[2023-04-01 05:07:32,452 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-081_S105_L001_R1_001.fastq
[2023-04-01 05:07:35,680 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-082_S106_L001_R1_001.fastq
[2023-04-01 05:07:37,907 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-083_S107_L001_R1_001.fastq
[2023-04-01 05:07:40,135 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-084_S108_L001_R1_001.fastq
[2023-04-01 05:07:42,366 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-085_S109_L001_R1_001.fastq
[2023-04-01 05:07:44,594 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-086_S110_L001_R1_001.fastq
[2023-04-01 05:07:46,822 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-087_S111_L001_R1_001.fastq
[2023-04-01 05:07:49,052 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-088_S112_L001_R1_001.fastq
[2023-04-01 05:07:51,298 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-089_S113_L001_R1_001.fastq
[2023-04-01 05:07:53,534 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-090_S114_L001_R1_001.fastq
[2023-04-01 05:07:55,764 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-091_S115_L001_R1_001.fastq
[2023-04-01 05:07:57,992 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-092_S116_L001_R1_001.fastq
[2023-04-01 05:08:00,220 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-093_S117_L001_R1_001.fastq
[2023-04-01 05:08:02,449 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-094_S118_L001_R1_001.fastq
[2023-04-01 05:08:04,677 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-095_S119_L001_R1_001.fastq
[2023-04-01 05:08:06,917 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-096_S120_L001_R1_001.fastq
[2023-04-01 05:08:09,146 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-097_S121_L001_R1_001.fastq
[2023-04-01 05:08:11,437 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-098_S122_L001_R1_001.fastq
[2023-04-01 05:08:13,696 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-099_S123_L001_R1_001.fastq
[2023-04-01 05:08:15,963 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-100_S124_L001_R1_001.fastq
[2023-04-01 05:08:18,192 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-101_S125_L001_R1_001.fastq
[2023-04-01 05:08:20,434 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-102_S126_L001_R1_001.fastq
[2023-04-01 05:08:22,665 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-103_S127_L001_R1_001.fastq
[2023-04-01 05:08:24,903 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-104_S128_L001_R1_001.fastq
[2023-04-01 05:08:27,131 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-105_S129_L001_R1_001.fastq
[2023-04-01 05:08:29,361 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-106_S130_L001_R1_001.fastq
[2023-04-01 05:08:31,588 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-107_S131_L001_R1_001.fastq
[2023-04-01 05:08:33,818 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-108_S132_L001_R1_001.fastq
[2023-04-01 05:08:36,084 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-109_S133_L001_R1_001.fastq
[2023-04-01 05:08:38,313 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-110_S134_L001_R1_001.fastq
[2023-04-01 05:08:40,570 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-111_S135_L001_R1_001.fastq
[2023-04-01 05:08:42,798 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-112_S136_L001_R1_001.fastq
[2023-04-01 05:08:45,060 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-113_S137_L001_R1_001.fastq
[2023-04-01 05:08:47,288 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-114_S138_L001_R1_001.fastq
[2023-04-01 05:08:50,533 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-115_S139_L001_R1_001.fastq
[2023-04-01 05:08:52,762 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-116_S140_L001_R1_001.fastq
[2023-04-01 05:08:55,011 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-117_S141_L001_R1_001.fastq
[2023-04-01 05:08:57,243 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-118_S142_L001_R1_001.fastq
[2023-04-01 05:08:59,511 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-119_S143_L001_R1_001.fastq
[2023-04-01 05:09:02,742 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-120_S144_L001_R1_001.fastq
[2023-04-01 05:09:04,968 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-121_S145_L001_R1_001.fastq
[2023-04-01 05:09:07,199 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-122_S146_L001_R1_001.fastq
[2023-04-01 05:09:09,429 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-123_S147_L001_R1_001.fastq
[2023-04-01 05:09:11,673 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-124_S148_L001_R1_001.fastq
[2023-04-01 05:09:13,921 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-125_S149_L001_R1_001.fastq
[2023-04-01 05:09:16,148 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-126_S150_L001_R1_001.fastq
[2023-04-01 05:09:18,376 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-127_S151_L001_R1_001.fastq
[2023-04-01 05:09:20,605 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-128_S152_L001_R1_001.fastq
[2023-04-01 05:09:22,834 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-129_S153_L001_R1_001.fastq
[2023-04-01 05:09:25,062 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-130_S154_L001_R1_001.fastq
[2023-04-01 05:09:27,288 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-131_S155_L001_R1_001.fastq
[2023-04-01 05:09:29,526 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-132_S156_L001_R1_001.fastq
[2023-04-01 05:09:31,755 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-133_S157_L001_R1_001.fastq
[2023-04-01 05:09:34,055 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-134_S158_L001_R1_001.fastq
[2023-04-01 05:09:36,313 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-135_S159_L001_R1_001.fastq
[2023-04-01 05:09:38,546 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-136_S160_L001_R1_001.fastq
[2023-04-01 05:09:40,806 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-137_S161_L001_R1_001.fastq
[2023-04-01 05:09:43,117 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-138_S162_L001_R1_001.fastq
[2023-04-01 05:09:45,346 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-139_S163_L001_R1_001.fastq
[2023-04-01 05:09:47,591 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-140_S164_L001_R1_001.fastq
[2023-04-01 05:09:49,817 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-141_S165_L001_R1_001.fastq
[2023-04-01 05:09:52,045 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-142_S166_L001_R1_001.fastq
[2023-04-01 05:09:54,271 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-143_S167_L001_R1_001.fastq
[2023-04-01 05:09:56,501 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-144_S168_L001_R1_001.fastq
[2023-04-01 05:09:58,728 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-145_S169_L001_R1_001.fastq
[2023-04-01 05:10:01,956 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-146_S170_L001_R1_001.fastq
[2023-04-01 05:10:04,198 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-147_S171_L001_R1_001.fastq
[2023-04-01 05:10:06,425 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-148_S172_L001_R1_001.fastq
[2023-04-01 05:10:08,656 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-149_S173_L001_R1_001.fastq
[2023-04-01 05:10:10,882 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-150_S174_L001_R1_001.fastq
[2023-04-01 05:10:13,107 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-151_S175_L001_R1_001.fastq
[2023-04-01 05:10:15,342 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-152_S176_L001_R1_001.fastq
[2023-04-01 05:10:17,575 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-153_S177_L001_R1_001.fastq
[2023-04-01 05:10:19,807 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-154_S178_L001_R1_001.fastq
[2023-04-01 05:10:22,035 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-155_S179_L001_R1_001.fastq
[2023-04-01 05:10:24,302 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-156_S180_L001_R1_001.fastq
[2023-04-01 05:10:26,530 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-157_S181_L001_R1_001.fastq
[2023-04-01 05:10:28,808 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-158_S182_L001_R1_001.fastq
[2023-04-01 05:10:31,035 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-159_S183_L001_R1_001.fastq
[2023-04-01 05:10:33,264 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-160_S184_L001_R1_001.fastq
[2023-04-01 05:10:35,498 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-161_S185_L001_R1_001.fastq
[2023-04-01 05:10:37,727 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-162_S186_L001_R1_001.fastq
[2023-04-01 05:10:39,966 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-163_S187_L001_R1_001.fastq
[2023-04-01 05:10:42,195 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-164_S188_L001_R1_001.fastq
[2023-04-01 05:10:44,431 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-165_S189_L001_R1_001.fastq
[2023-04-01 05:10:46,660 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-166_S190_L001_R1_001.fastq
[2023-04-01 05:10:48,901 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-167_S191_L001_R1_001.fastq
[2023-04-01 05:10:51,143 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-168_S192_L001_R1_001.fastq
[2023-04-01 05:10:53,370 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-169_S193_L001_R1_001.fastq
[2023-04-01 05:10:55,632 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-170_S194_L001_R1_001.fastq
[2023-04-01 05:10:57,862 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-171_S195_L001_R1_001.fastq
[2023-04-01 05:11:00,091 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-172_S196_L001_R1_001.fastq
[2023-04-01 05:11:02,319 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-173_S197_L001_R1_001.fastq
[2023-04-01 05:11:04,555 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-174_S198_L001_R1_001.fastq
[2023-04-01 05:11:06,786 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-175_S199_L001_R1_001.fastq
[2023-04-01 05:11:09,013 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-176_S200_L001_R1_001.fastq
[2023-04-01 05:11:11,243 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-177_S201_L001_R1_001.fastq
[2023-04-01 05:11:13,470 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-178_S202_L001_R1_001.fastq
[2023-04-01 05:11:15,765 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-179_S203_L001_R1_001.fastq
[2023-04-01 05:11:18,009 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-180_S204_L001_R1_001.fastq
[2023-04-01 05:11:20,255 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-181_S205_L001_R1_001.fastq
[2023-04-01 05:11:22,485 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-182_S206_L001_R1_001.fastq
[2023-04-01 05:11:24,717 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-183_S207_L001_R1_001.fastq
[2023-04-01 05:11:26,963 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-184_S208_L001_R1_001.fastq
[2023-04-01 05:11:29,191 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-185_S209_L001_R1_001.fastq
[2023-04-01 05:11:31,417 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-186_S210_L001_R1_001.fastq
[2023-04-01 05:11:33,658 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-187_S211_L001_R1_001.fastq
[2023-04-01 05:11:35,888 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-188_S212_L001_R1_001.fastq
[2023-04-01 05:11:38,114 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-189_S213_L001_R1_001.fastq
[2023-04-01 05:11:40,344 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-190_S214_L001_R1_001.fastq
[2023-04-01 05:11:42,573 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-191_S215_L001_R1_001.fastq
[2023-04-01 05:11:44,800 - INFO] trying to run:
fastqc -o /nephele_data/outputs/multiqc_input/ /nephele_data/inputs/zebra-192_S216_L001_R1_001.fastq
[2023-04-01 05:11:47,043 - INFO] Finished Fastqc, see /nephele_data/outputs/multiqc_input/ for outputs.
[2023-04-01 05:11:47,054 - INFO] cutadapt args: ['--cores', 16, '--match-read-wildcards', '--overlap', 3, '--error-rate', 0.1, '-g', 'GTGYCAGCMGCCGCGGTAA']
[2023-04-01 05:11:47,054 - INFO] Running cutadapt for: /nephele_data/inputs/R22-00_S9_L001_R1_001.fastq
[2023-04-01 05:11:47,477 - INFO] Running cutadapt for: /nephele_data/inputs/R22-01_S10_L001_R1_001.fastq
[2023-04-01 05:11:47,749 - INFO] Running cutadapt for: /nephele_data/inputs/R22-02_S11_L001_R1_001.fastq
[2023-04-01 05:11:48,070 - INFO] Running cutadapt for: /nephele_data/inputs/R22-03_S12_L001_R1_001.fastq
[2023-04-01 05:11:48,372 - INFO] Running cutadapt for: /nephele_data/inputs/R22-06_S13_L001_R1_001.fastq
[2023-04-01 05:11:48,699 - INFO] Running cutadapt for: /nephele_data/inputs/R22-07_S14_L001_R1_001.fastq
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[2023-04-01 05:11:50,233 - INFO] Running cutadapt for: /nephele_data/inputs/R22-13_S20_L001_R1_001.fastq
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[2023-04-01 05:11:51,237 - INFO] Running cutadapt for: /nephele_data/inputs/R22-51_S23_L001_R1_001.fastq
[2023-04-01 05:11:51,521 - INFO] Running cutadapt for: /nephele_data/inputs/R22-52_S24_L001_R1_001.fastq
[2023-04-01 05:11:51,888 - INFO] Running cutadapt for: /nephele_data/inputs/R22-53_S8_L001_R1_001.fastq
[2023-04-01 05:11:52,042 - INFO] Running cutadapt for: /nephele_data/inputs/R22-54_S7_L001_R1_001.fastq
[2023-04-01 05:11:52,401 - INFO] Running cutadapt for: /nephele_data/inputs/R22-55_S6_L001_R1_001.fastq
[2023-04-01 05:11:52,715 - INFO] Running cutadapt for: /nephele_data/inputs/R22-56_S5_L001_R1_001.fastq
[2023-04-01 05:11:53,125 - INFO] Running cutadapt for: /nephele_data/inputs/R22-60_S4_L001_R1_001.fastq
[2023-04-01 05:11:53,489 - INFO] Running cutadapt for: /nephele_data/inputs/R22-61_S3_L001_R1_001.fastq
[2023-04-01 05:11:53,865 - INFO] Running cutadapt for: /nephele_data/inputs/R22-W_S1_L001_R1_001.fastq
[2023-04-01 05:11:54,066 - INFO] Running cutadapt for: /nephele_data/inputs/R22-W_S2_L001_R1_001.fastq
[2023-04-01 05:11:54,355 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-001_S25_L001_R1_001.fastq
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[2023-04-01 05:11:54,885 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-005_S29_L001_R1_001.fastq
[2023-04-01 05:11:55,008 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-006_S30_L001_R1_001.fastq
[2023-04-01 05:11:55,126 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-007_S31_L001_R1_001.fastq
[2023-04-01 05:11:55,262 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-008_S32_L001_R1_001.fastq
[2023-04-01 05:11:55,380 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-009_S33_L001_R1_001.fastq
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[2023-04-01 05:11:55,891 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-013_S37_L001_R1_001.fastq
[2023-04-01 05:11:56,022 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-014_S38_L001_R1_001.fastq
[2023-04-01 05:11:56,154 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-015_S39_L001_R1_001.fastq
[2023-04-01 05:11:56,280 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-016_S40_L001_R1_001.fastq
[2023-04-01 05:11:56,397 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-017_S41_L001_R1_001.fastq
[2023-04-01 05:11:56,524 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-018_S42_L001_R1_001.fastq
[2023-04-01 05:11:56,659 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-019_S43_L001_R1_001.fastq
[2023-04-01 05:11:56,791 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-020_S44_L001_R1_001.fastq
[2023-04-01 05:11:56,932 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-021_S45_L001_R1_001.fastq
[2023-04-01 05:11:57,076 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-022_S46_L001_R1_001.fastq
[2023-04-01 05:11:57,200 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-023_S47_L001_R1_001.fastq
[2023-04-01 05:11:57,317 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-024_S48_L001_R1_001.fastq
[2023-04-01 05:11:57,432 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-025_S49_L001_R1_001.fastq
[2023-04-01 05:11:57,557 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-026_S50_L001_R1_001.fastq
[2023-04-01 05:11:57,687 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-027_S51_L001_R1_001.fastq
[2023-04-01 05:11:57,811 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-028_S52_L001_R1_001.fastq
[2023-04-01 05:11:57,934 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-029_S53_L001_R1_001.fastq
[2023-04-01 05:11:58,072 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-030_S54_L001_R1_001.fastq
[2023-04-01 05:11:58,192 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-031_S55_L001_R1_001.fastq
[2023-04-01 05:11:58,328 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-032_S56_L001_R1_001.fastq
[2023-04-01 05:11:58,446 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-033_S57_L001_R1_001.fastq
[2023-04-01 05:11:58,568 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-034_S58_L001_R1_001.fastq
[2023-04-01 05:11:58,704 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-035_S59_L001_R1_001.fastq
[2023-04-01 05:11:58,837 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-036_S60_L001_R1_001.fastq
[2023-04-01 05:11:58,970 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-037_S61_L001_R1_001.fastq
[2023-04-01 05:11:59,114 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-038_S62_L001_R1_001.fastq
[2023-04-01 05:11:59,253 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-039_S63_L001_R1_001.fastq
[2023-04-01 05:11:59,378 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-040_S64_L001_R1_001.fastq
[2023-04-01 05:11:59,513 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-041_S65_L001_R1_001.fastq
[2023-04-01 05:11:59,643 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-042_S66_L001_R1_001.fastq
[2023-04-01 05:11:59,770 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-043_S67_L001_R1_001.fastq
[2023-04-01 05:11:59,896 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-044_S68_L001_R1_001.fastq
[2023-04-01 05:12:00,029 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-045_S69_L001_R1_001.fastq
[2023-04-01 05:12:00,152 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-046_S70_L001_R1_001.fastq
[2023-04-01 05:12:00,287 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-047_S71_L001_R1_001.fastq
[2023-04-01 05:12:00,410 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-048_S72_L001_R1_001.fastq
[2023-04-01 05:12:00,534 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-049_S73_L001_R1_001.fastq
[2023-04-01 05:12:00,656 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-050_S74_L001_R1_001.fastq
[2023-04-01 05:12:00,779 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-051_S75_L001_R1_001.fastq
[2023-04-01 05:12:00,903 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-052_S76_L001_R1_001.fastq
[2023-04-01 05:12:01,028 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-053_S77_L001_R1_001.fastq
[2023-04-01 05:12:01,162 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-054_S78_L001_R1_001.fastq
[2023-04-01 05:12:01,295 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-055_S79_L001_R1_001.fastq
[2023-04-01 05:12:01,428 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-056_S80_L001_R1_001.fastq
[2023-04-01 05:12:01,577 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-057_S81_L001_R1_001.fastq
[2023-04-01 05:12:01,691 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-058_S82_L001_R1_001.fastq
[2023-04-01 05:12:01,815 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-059_S83_L001_R1_001.fastq
[2023-04-01 05:12:01,949 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-060_S84_L001_R1_001.fastq
[2023-04-01 05:12:02,078 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-061_S85_L001_R1_001.fastq
[2023-04-01 05:12:02,208 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-062_S86_L001_R1_001.fastq
[2023-04-01 05:12:02,340 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-063_S87_L001_R1_001.fastq
[2023-04-01 05:12:02,466 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-064_S88_L001_R1_001.fastq
[2023-04-01 05:12:02,589 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-065_S89_L001_R1_001.fastq
[2023-04-01 05:12:02,725 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-066_S90_L001_R1_001.fastq
[2023-04-01 05:12:02,842 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-067_S91_L001_R1_001.fastq
[2023-04-01 05:12:02,969 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-068_S92_L001_R1_001.fastq
[2023-04-01 05:12:03,100 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-069_S93_L001_R1_001.fastq
[2023-04-01 05:12:03,218 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-070_S94_L001_R1_001.fastq
[2023-04-01 05:12:03,353 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-071_S95_L001_R1_001.fastq
[2023-04-01 05:12:03,494 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-072_S96_L001_R1_001.fastq
[2023-04-01 05:12:03,619 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-073_S97_L001_R1_001.fastq
[2023-04-01 05:12:03,752 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-074_S98_L001_R1_001.fastq
[2023-04-01 05:12:03,879 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-075_S99_L001_R1_001.fastq
[2023-04-01 05:12:04,004 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-076_S100_L001_R1_001.fastq
[2023-04-01 05:12:04,138 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-077_S101_L001_R1_001.fastq
[2023-04-01 05:12:04,277 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-078_S102_L001_R1_001.fastq
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[2023-04-01 05:12:04,543 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-080_S104_L001_R1_001.fastq
[2023-04-01 05:12:04,668 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-081_S105_L001_R1_001.fastq
[2023-04-01 05:12:04,788 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-082_S106_L001_R1_001.fastq
[2023-04-01 05:12:04,910 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-083_S107_L001_R1_001.fastq
[2023-04-01 05:12:05,045 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-084_S108_L001_R1_001.fastq
[2023-04-01 05:12:05,176 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-085_S109_L001_R1_001.fastq
[2023-04-01 05:12:05,305 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-086_S110_L001_R1_001.fastq
[2023-04-01 05:12:05,437 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-087_S111_L001_R1_001.fastq
[2023-04-01 05:12:05,573 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-088_S112_L001_R1_001.fastq
[2023-04-01 05:12:05,698 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-089_S113_L001_R1_001.fastq
[2023-04-01 05:12:05,821 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-090_S114_L001_R1_001.fastq
[2023-04-01 05:12:05,949 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-091_S115_L001_R1_001.fastq
[2023-04-01 05:12:06,085 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-092_S116_L001_R1_001.fastq
[2023-04-01 05:12:06,235 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-093_S117_L001_R1_001.fastq
[2023-04-01 05:12:06,365 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-094_S118_L001_R1_001.fastq
[2023-04-01 05:12:06,512 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-095_S119_L001_R1_001.fastq
[2023-04-01 05:12:06,651 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-096_S120_L001_R1_001.fastq
[2023-04-01 05:12:06,794 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-097_S121_L001_R1_001.fastq
[2023-04-01 05:12:06,961 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-098_S122_L001_R1_001.fastq
[2023-04-01 05:12:07,125 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-099_S123_L001_R1_001.fastq
[2023-04-01 05:12:07,282 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-100_S124_L001_R1_001.fastq
[2023-04-01 05:12:07,440 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-101_S125_L001_R1_001.fastq
[2023-04-01 05:12:07,590 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-102_S126_L001_R1_001.fastq
[2023-04-01 05:12:07,734 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-103_S127_L001_R1_001.fastq
[2023-04-01 05:12:07,896 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-104_S128_L001_R1_001.fastq
[2023-04-01 05:12:08,038 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-105_S129_L001_R1_001.fastq
[2023-04-01 05:12:08,208 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-106_S130_L001_R1_001.fastq
[2023-04-01 05:12:08,359 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-107_S131_L001_R1_001.fastq
[2023-04-01 05:12:08,514 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-108_S132_L001_R1_001.fastq
[2023-04-01 05:12:08,659 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-109_S133_L001_R1_001.fastq
[2023-04-01 05:12:08,830 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-110_S134_L001_R1_001.fastq
[2023-04-01 05:12:09,006 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-111_S135_L001_R1_001.fastq
[2023-04-01 05:12:09,192 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-112_S136_L001_R1_001.fastq
[2023-04-01 05:12:09,359 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-113_S137_L001_R1_001.fastq
[2023-04-01 05:12:09,534 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-114_S138_L001_R1_001.fastq
[2023-04-01 05:12:09,719 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-115_S139_L001_R1_001.fastq
[2023-04-01 05:12:09,912 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-116_S140_L001_R1_001.fastq
[2023-04-01 05:12:10,087 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-117_S141_L001_R1_001.fastq
[2023-04-01 05:12:10,281 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-118_S142_L001_R1_001.fastq
[2023-04-01 05:12:10,485 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-119_S143_L001_R1_001.fastq
[2023-04-01 05:12:10,696 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-120_S144_L001_R1_001.fastq
[2023-04-01 05:12:10,910 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-121_S145_L001_R1_001.fastq
[2023-04-01 05:12:11,053 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-122_S146_L001_R1_001.fastq
[2023-04-01 05:12:11,203 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-123_S147_L001_R1_001.fastq
[2023-04-01 05:12:11,356 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-124_S148_L001_R1_001.fastq
[2023-04-01 05:12:11,527 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-125_S149_L001_R1_001.fastq
[2023-04-01 05:12:11,691 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-126_S150_L001_R1_001.fastq
[2023-04-01 05:12:11,847 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-127_S151_L001_R1_001.fastq
[2023-04-01 05:12:12,020 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-128_S152_L001_R1_001.fastq
[2023-04-01 05:12:12,182 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-129_S153_L001_R1_001.fastq
[2023-04-01 05:12:12,341 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-130_S154_L001_R1_001.fastq
[2023-04-01 05:12:12,511 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-131_S155_L001_R1_001.fastq
[2023-04-01 05:12:12,631 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-132_S156_L001_R1_001.fastq
[2023-04-01 05:12:12,798 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-133_S157_L001_R1_001.fastq
[2023-04-01 05:12:12,966 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-134_S158_L001_R1_001.fastq
[2023-04-01 05:12:13,138 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-135_S159_L001_R1_001.fastq
[2023-04-01 05:12:13,294 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-136_S160_L001_R1_001.fastq
[2023-04-01 05:12:13,458 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-137_S161_L001_R1_001.fastq
[2023-04-01 05:12:13,609 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-138_S162_L001_R1_001.fastq
[2023-04-01 05:12:13,764 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-139_S163_L001_R1_001.fastq
[2023-04-01 05:12:13,891 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-140_S164_L001_R1_001.fastq
[2023-04-01 05:12:14,055 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-141_S165_L001_R1_001.fastq
[2023-04-01 05:12:14,194 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-142_S166_L001_R1_001.fastq
[2023-04-01 05:12:14,329 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-143_S167_L001_R1_001.fastq
[2023-04-01 05:12:14,471 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-144_S168_L001_R1_001.fastq
[2023-04-01 05:12:14,616 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-145_S169_L001_R1_001.fastq
[2023-04-01 05:12:14,735 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-146_S170_L001_R1_001.fastq
[2023-04-01 05:12:14,869 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-147_S171_L001_R1_001.fastq
[2023-04-01 05:12:15,010 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-148_S172_L001_R1_001.fastq
[2023-04-01 05:12:15,143 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-149_S173_L001_R1_001.fastq
[2023-04-01 05:12:15,275 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-150_S174_L001_R1_001.fastq
[2023-04-01 05:12:15,431 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-151_S175_L001_R1_001.fastq
[2023-04-01 05:12:15,583 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-152_S176_L001_R1_001.fastq
[2023-04-01 05:12:15,726 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-153_S177_L001_R1_001.fastq
[2023-04-01 05:12:15,865 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-154_S178_L001_R1_001.fastq
[2023-04-01 05:12:16,011 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-155_S179_L001_R1_001.fastq
[2023-04-01 05:12:16,164 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-156_S180_L001_R1_001.fastq
[2023-04-01 05:12:16,315 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-157_S181_L001_R1_001.fastq
[2023-04-01 05:12:16,443 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-158_S182_L001_R1_001.fastq
[2023-04-01 05:12:16,593 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-159_S183_L001_R1_001.fastq
[2023-04-01 05:12:16,727 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-160_S184_L001_R1_001.fastq
[2023-04-01 05:12:16,841 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-161_S185_L001_R1_001.fastq
[2023-04-01 05:12:16,994 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-162_S186_L001_R1_001.fastq
[2023-04-01 05:12:17,137 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-163_S187_L001_R1_001.fastq
[2023-04-01 05:12:17,270 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-164_S188_L001_R1_001.fastq
[2023-04-01 05:12:17,391 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-165_S189_L001_R1_001.fastq
[2023-04-01 05:12:17,539 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-166_S190_L001_R1_001.fastq
[2023-04-01 05:12:17,653 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-167_S191_L001_R1_001.fastq
[2023-04-01 05:12:17,766 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-168_S192_L001_R1_001.fastq
[2023-04-01 05:12:17,908 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-169_S193_L001_R1_001.fastq
[2023-04-01 05:12:18,021 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-170_S194_L001_R1_001.fastq
[2023-04-01 05:12:18,161 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-171_S195_L001_R1_001.fastq
[2023-04-01 05:12:18,298 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-172_S196_L001_R1_001.fastq
[2023-04-01 05:12:18,465 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-173_S197_L001_R1_001.fastq
[2023-04-01 05:12:18,630 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-174_S198_L001_R1_001.fastq
[2023-04-01 05:12:18,792 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-175_S199_L001_R1_001.fastq
[2023-04-01 05:12:18,959 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-176_S200_L001_R1_001.fastq
[2023-04-01 05:12:19,097 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-177_S201_L001_R1_001.fastq
[2023-04-01 05:12:19,235 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-178_S202_L001_R1_001.fastq
[2023-04-01 05:12:19,402 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-179_S203_L001_R1_001.fastq
[2023-04-01 05:12:19,536 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-180_S204_L001_R1_001.fastq
[2023-04-01 05:12:19,703 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-181_S205_L001_R1_001.fastq
[2023-04-01 05:12:19,847 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-182_S206_L001_R1_001.fastq
[2023-04-01 05:12:19,991 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-183_S207_L001_R1_001.fastq
[2023-04-01 05:12:20,144 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-184_S208_L001_R1_001.fastq
[2023-04-01 05:12:20,328 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-185_S209_L001_R1_001.fastq
[2023-04-01 05:12:20,450 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-186_S210_L001_R1_001.fastq
[2023-04-01 05:12:20,605 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-187_S211_L001_R1_001.fastq
[2023-04-01 05:12:20,748 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-188_S212_L001_R1_001.fastq
[2023-04-01 05:12:20,928 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-189_S213_L001_R1_001.fastq
[2023-04-01 05:12:21,074 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-190_S214_L001_R1_001.fastq
[2023-04-01 05:12:21,243 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-191_S215_L001_R1_001.fastq
[2023-04-01 05:12:21,424 - INFO] Running cutadapt for: /nephele_data/inputs/zebra-192_S216_L001_R1_001.fastq
[2023-04-01 05:12:21,592 - INFO] Finished cutadapt.
[2023-04-01 05:12:21,592 - INFO] Run Trimmomatic quality trimming selected.
[2023-04-01 05:12:21,592 - INFO] Trying to create /nephele_data/outputs/qtrimmed_seqs/.
[2023-04-01 05:12:21,603 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-00_S9_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-00-Nawoh-OP-SW-captive.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:23,485 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-00_S9_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-00-Nawoh-OP-SW-captive.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 54749 Surviving: 54694 (99.90%) Dropped: 55 (0.10%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:23,485 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-01_S10_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-01-Najin-OP-NW-captive.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:24,532 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-01_S10_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-01-Najin-OP-NW-captive.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 24909 Surviving: 24897 (99.95%) Dropped: 12 (0.05%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:24,532 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-02_S11_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-02-Fatu-OP-NW-captive.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:25,883 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-02_S11_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-02-Fatu-OP-NW-captive.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 35743 Surviving: 35718 (99.93%) Dropped: 25 (0.07%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:25,884 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-03_S12_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-03-Kevin-OP-BL-wild.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:27,116 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-03_S12_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-03-Kevin-OP-BL-wild.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 32745 Surviving: 32716 (99.91%) Dropped: 29 (0.09%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:27,116 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-06_S13_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-06-Oakley-OP-BL-wild.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:28,540 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-06_S13_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-06-Oakley-OP-BL-wild.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 44656 Surviving: 44637 (99.96%) Dropped: 19 (0.04%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:28,540 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-07_S14_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-07-Feohat-OP-BL-wild.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:28,735 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-07_S14_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-07-Feohat-OP-BL-wild.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 208 Surviving: 207 (99.52%) Dropped: 1 (0.48%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:28,735 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-08_S15_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-08-Dada-OP-BL-wild.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:30,322 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-08_S15_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-08-Dada-OP-BL-wild.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 49985 Surviving: 49952 (99.93%) Dropped: 33 (0.07%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:30,322 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-09_S16_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-09-Hatari-OP-BL-wild.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:31,568 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-09_S16_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-09-Hatari-OP-BL-wild.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 32550 Surviving: 32534 (99.95%) Dropped: 16 (0.05%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:31,568 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-10_S17_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-10-Njoki-OP-BL-wild.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:31,737 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-10_S17_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-10-Njoki-OP-BL-wild.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 65 Surviving: 64 (98.46%) Dropped: 1 (1.54%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:31,737 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-11_S18_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-11-NjokiCalf-OP-BL-wild.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:32,971 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-11_S18_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-11-NjokiCalf-OP-BL-wild.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 38935 Surviving: 38917 (99.95%) Dropped: 18 (0.05%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:32,971 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-12_S19_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-12-Roberto-OP-BL-wild.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:34,308 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-12_S19_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-12-Roberto-OP-BL-wild.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 37445 Surviving: 37429 (99.96%) Dropped: 16 (0.04%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:34,308 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-13_S20_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-13-Muuna-OP-BL-wild.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:35,513 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-13_S20_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-13-Muuna-OP-BL-wild.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 40322 Surviving: 40304 (99.96%) Dropped: 18 (0.04%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:35,513 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-14_S21_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-14-Berkley-OP-BL-wild.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:36,781 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-14_S21_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-14-Berkley-OP-BL-wild.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 36532 Surviving: 36505 (99.93%) Dropped: 27 (0.07%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:36,782 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-15_S22_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-15-Thea-OP-BL-captive.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:38,609 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-15_S22_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-15-Thea-OP-BL-captive.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 58240 Surviving: 58213 (99.95%) Dropped: 27 (0.05%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:38,609 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-51_S23_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-51-Fahari-OJ-BL-ND.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:39,788 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-51_S23_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-51-Fahari-OJ-BL-ND.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 31813 Surviving: 31782 (99.90%) Dropped: 31 (0.10%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:39,788 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-52_S24_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-52-Rafiki-OJ-BL-wild.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:41,376 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-52_S24_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-52-Rafiki-OJ-BL-wild.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 43958 Surviving: 43921 (99.92%) Dropped: 37 (0.08%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:41,376 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-53_S8_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-53-Helga-OJ-BL-wild.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:41,717 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-53_S8_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-53-Helga-OJ-BL-wild.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 3867 Surviving: 3862 (99.87%) Dropped: 5 (0.13%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:41,717 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-54_S7_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-54-ND-OJ-ND-wild.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:43,350 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-54_S7_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-54-ND-OJ-ND-wild.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 43964 Surviving: 43930 (99.92%) Dropped: 34 (0.08%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:43,350 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-55_S6_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-55-Baraka-OJ-BL-wild.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:44,614 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-55_S6_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-55-Baraka-OJ-BL-wild.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 36390 Surviving: 36367 (99.94%) Dropped: 23 (0.06%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:44,614 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-56_S5_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-56-Bahati-OJ-SW-wild.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:46,495 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-56_S5_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-56-Bahati-OJ-SW-wild.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 51268 Surviving: 51241 (99.95%) Dropped: 27 (0.05%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:46,495 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-60_S4_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-60-Alfie-12y-OJ-BL-captive.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:48,174 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-60_S4_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-60-Alfie-12y-OJ-BL-captive.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 47316 Surviving: 47283 (99.93%) Dropped: 33 (0.07%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:48,174 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-61_S3_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-61-Alfie-14y-OJ-BL-captive.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:49,884 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-61_S3_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-61-Alfie-14y-OJ-BL-captive.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 54416 Surviving: 54392 (99.96%) Dropped: 24 (0.04%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:49,884 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-W_S1_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-NTC1-EB3-NegCtrl.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:50,412 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-W_S1_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-NTC1-EB3-NegCtrl.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 10746 Surviving: 10737 (99.92%) Dropped: 9 (0.08%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:50,412 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-W_S2_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-NTC2-W-NegCtrl.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:51,556 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/R22-W_S2_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/R22-NTC2-W-NegCtrl.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 28786 Surviving: 28771 (99.95%) Dropped: 15 (0.05%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:51,556 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-001_S25_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-001.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:51,846 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-001_S25_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-001.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1989 Surviving: 1989 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:51,846 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-002_S26_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-002.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:52,123 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-002_S26_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-002.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1602 Surviving: 1601 (99.94%) Dropped: 1 (0.06%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:52,123 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-003_S27_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-003.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:52,455 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-003_S27_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-003.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 3219 Surviving: 3219 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:52,455 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-004_S28_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-004.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:52,746 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-004_S28_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-004.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1422 Surviving: 1421 (99.93%) Dropped: 1 (0.07%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:52,746 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-005_S29_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-005.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:53,014 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-005_S29_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-005.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1085 Surviving: 1085 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:53,014 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-006_S30_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-006.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:53,258 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-006_S30_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-006.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 880 Surviving: 880 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:53,258 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-007_S31_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-007.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:53,564 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-007_S31_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-007.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2258 Surviving: 2258 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:53,565 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-008_S32_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-008.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:53,776 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-008_S32_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-008.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 340 Surviving: 340 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:53,776 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-009_S33_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-009.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:54,061 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-009_S33_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-009.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1814 Surviving: 1814 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:54,061 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-010_S34_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-010.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:54,330 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-010_S34_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-010.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1425 Surviving: 1424 (99.93%) Dropped: 1 (0.07%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:54,330 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-011_S35_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-011.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:54,595 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-011_S35_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-011.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1499 Surviving: 1498 (99.93%) Dropped: 1 (0.07%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:54,595 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-012_S36_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-012.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:54,877 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-012_S36_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-012.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1817 Surviving: 1817 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:54,877 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-013_S37_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-013.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:55,179 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-013_S37_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-013.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1919 Surviving: 1919 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:55,179 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-014_S38_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-014.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:55,463 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-014_S38_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-014.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1889 Surviving: 1889 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:55,463 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-015_S39_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-015.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:55,729 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-015_S39_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-015.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1544 Surviving: 1544 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:55,729 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-016_S40_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-016.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:55,951 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-016_S40_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-016.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 615 Surviving: 614 (99.84%) Dropped: 1 (0.16%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:55,951 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-017_S41_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-017.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:56,224 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-017_S41_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-017.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1629 Surviving: 1628 (99.94%) Dropped: 1 (0.06%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:56,225 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-018_S42_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-018.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:56,526 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-018_S42_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-018.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2428 Surviving: 2427 (99.96%) Dropped: 1 (0.04%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:56,526 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-019_S43_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-019.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:56,810 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-019_S43_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-019.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1930 Surviving: 1926 (99.79%) Dropped: 4 (0.21%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:56,810 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-020_S44_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-020.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:57,130 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-020_S44_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-020.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2788 Surviving: 2786 (99.93%) Dropped: 2 (0.07%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:57,130 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-021_S45_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-021.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:57,458 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-021_S45_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-021.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 3063 Surviving: 3060 (99.90%) Dropped: 3 (0.10%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:57,458 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-022_S46_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-022.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:57,726 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-022_S46_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-022.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1528 Surviving: 1527 (99.93%) Dropped: 1 (0.07%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:57,726 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-023_S47_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-023.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:57,938 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-023_S47_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-023.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 372 Surviving: 372 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:57,938 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-024_S48_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-024.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:58,131 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-024_S48_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-024.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 162 Surviving: 162 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:58,131 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-025_S49_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-025.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:58,405 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-025_S49_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-025.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1544 Surviving: 1542 (99.87%) Dropped: 2 (0.13%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:58,405 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-026_S50_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-026.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:58,682 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-026_S50_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-026.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1827 Surviving: 1827 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:58,682 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-027_S51_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-027.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:58,965 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-027_S51_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-027.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1596 Surviving: 1595 (99.94%) Dropped: 1 (0.06%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:58,965 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-028_S52_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-028.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:59,245 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-028_S52_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-028.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1338 Surviving: 1338 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:59,246 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-029_S53_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-029.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:59,559 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-029_S53_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-029.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2327 Surviving: 2327 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:59,559 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-030_S54_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-030.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:12:59,820 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-030_S54_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-030.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1086 Surviving: 1085 (99.91%) Dropped: 1 (0.09%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:12:59,820 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-031_S55_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-031.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:00,129 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-031_S55_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-031.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2313 Surviving: 2312 (99.96%) Dropped: 1 (0.04%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:00,129 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-032_S56_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-032.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:00,354 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-032_S56_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-032.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 657 Surviving: 655 (99.70%) Dropped: 2 (0.30%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:00,354 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-033_S57_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-033.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:00,640 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-033_S57_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-033.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1161 Surviving: 1161 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:00,640 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-034_S58_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-034.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:00,933 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-034_S58_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-034.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2114 Surviving: 2113 (99.95%) Dropped: 1 (0.05%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:00,933 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-035_S59_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-035.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:01,221 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-035_S59_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-035.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1946 Surviving: 1944 (99.90%) Dropped: 2 (0.10%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:01,221 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-036_S60_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-036.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:01,506 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-036_S60_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-036.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1869 Surviving: 1866 (99.84%) Dropped: 3 (0.16%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:01,506 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-037_S61_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-037.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:01,837 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-037_S61_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-037.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2852 Surviving: 2851 (99.96%) Dropped: 1 (0.04%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:01,838 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-038_S62_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-038.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:02,158 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-038_S62_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-038.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2583 Surviving: 2581 (99.92%) Dropped: 2 (0.08%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:02,158 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-039_S63_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-039.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:02,439 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-039_S63_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-039.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1319 Surviving: 1318 (99.92%) Dropped: 1 (0.08%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:02,439 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-040_S64_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-040.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:02,739 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-040_S64_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-040.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2067 Surviving: 2066 (99.95%) Dropped: 1 (0.05%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:02,739 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-041_S65_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-041.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:03,019 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-041_S65_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-041.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1892 Surviving: 1891 (99.95%) Dropped: 1 (0.05%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:03,019 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-042_S66_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-042.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:03,299 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-042_S66_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-042.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1740 Surviving: 1737 (99.83%) Dropped: 3 (0.17%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:03,299 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-043_S67_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-043.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:03,592 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-043_S67_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-043.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1703 Surviving: 1703 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:03,592 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-044_S68_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-044.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:03,879 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-044_S68_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-044.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1896 Surviving: 1894 (99.89%) Dropped: 2 (0.11%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:03,879 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-045_S69_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-045.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:04,156 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-045_S69_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-045.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1415 Surviving: 1415 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:04,156 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-046_S70_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-046.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:04,448 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-046_S70_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-046.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1978 Surviving: 1978 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:04,448 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-047_S71_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-047.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:04,723 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-047_S71_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-047.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1266 Surviving: 1266 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:04,723 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-048_S72_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-048.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:04,991 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-048_S72_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-048.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1381 Surviving: 1380 (99.93%) Dropped: 1 (0.07%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:04,991 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-049_S73_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-049.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:05,262 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-049_S73_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-049.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1254 Surviving: 1253 (99.92%) Dropped: 1 (0.08%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:05,262 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-050_S74_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-050.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:05,530 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-050_S74_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-050.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1401 Surviving: 1401 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:05,530 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-051_S75_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-051.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:05,803 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-051_S75_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-051.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1414 Surviving: 1414 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:05,803 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-052_S76_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-052.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:06,074 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-052_S76_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-052.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1446 Surviving: 1445 (99.93%) Dropped: 1 (0.07%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:06,074 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-053_S77_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-053.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:06,378 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-053_S77_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-053.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2097 Surviving: 2095 (99.90%) Dropped: 2 (0.10%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:06,378 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-054_S78_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-054.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:06,683 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-054_S78_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-054.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2267 Surviving: 2267 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:06,683 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-055_S79_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-055.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:06,967 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-055_S79_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-055.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2014 Surviving: 2013 (99.95%) Dropped: 1 (0.05%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:06,967 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-056_S80_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-056.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:07,305 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-056_S80_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-056.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 3403 Surviving: 3402 (99.97%) Dropped: 1 (0.03%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:07,305 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-057_S81_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-057.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:07,474 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-057_S81_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-057.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 63 Surviving: 63 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:07,474 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-058_S82_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-058.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:07,751 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-058_S82_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-058.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1578 Surviving: 1577 (99.94%) Dropped: 1 (0.06%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:07,751 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-059_S83_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-059.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:08,055 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-059_S83_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-059.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2211 Surviving: 2208 (99.86%) Dropped: 3 (0.14%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:08,055 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-060_S84_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-060.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:08,322 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-060_S84_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-060.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1813 Surviving: 1813 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:08,322 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-061_S85_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-061.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:08,604 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-061_S85_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-061.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1774 Surviving: 1773 (99.94%) Dropped: 1 (0.06%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:08,604 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-062_S86_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-062.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:08,904 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-062_S86_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-062.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2156 Surviving: 2155 (99.95%) Dropped: 1 (0.05%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:08,904 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-063_S87_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-063.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:09,183 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-063_S87_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-063.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1679 Surviving: 1677 (99.88%) Dropped: 2 (0.12%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:09,183 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-064_S88_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-064.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:09,455 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-064_S88_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-064.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1163 Surviving: 1163 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:09,456 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-065_S89_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-065.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:09,761 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-065_S89_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-065.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2204 Surviving: 2202 (99.91%) Dropped: 2 (0.09%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:09,761 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-066_S90_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-066.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:09,964 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-066_S90_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-066.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 305 Surviving: 305 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:09,964 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-067_S91_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-067.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:10,239 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-067_S91_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-067.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1599 Surviving: 1594 (99.69%) Dropped: 5 (0.31%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:10,239 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-068_S92_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-068.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:10,514 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-068_S92_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-068.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1860 Surviving: 1857 (99.84%) Dropped: 3 (0.16%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:10,514 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-069_S93_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-069.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:10,727 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-069_S93_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-069.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 445 Surviving: 445 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:10,727 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-070_S94_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-070.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:11,040 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-070_S94_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-070.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2214 Surviving: 2213 (99.95%) Dropped: 1 (0.05%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:11,040 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-071_S95_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-071.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:11,376 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-071_S95_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-071.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2682 Surviving: 2682 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:11,376 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-072_S96_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-072.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:11,638 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-072_S96_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-072.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1278 Surviving: 1278 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:11,638 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-073_S97_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-073.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:11,927 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-073_S97_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-073.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2018 Surviving: 2018 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:11,927 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-074_S98_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-074.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:12,226 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-074_S98_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-074.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1727 Surviving: 1727 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:12,226 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-075_S99_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-075.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:12,502 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-075_S99_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-075.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1691 Surviving: 1691 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:12,502 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-076_S100_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-076.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:12,791 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-076_S100_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-076.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1841 Surviving: 1839 (99.89%) Dropped: 2 (0.11%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:12,791 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-077_S101_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-077.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:13,144 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-077_S101_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-077.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2522 Surviving: 2520 (99.92%) Dropped: 2 (0.08%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:13,144 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-078_S102_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-078.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:13,426 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-078_S102_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-078.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2100 Surviving: 2100 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:13,426 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-079_S103_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-079.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:13,703 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-079_S103_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-079.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1898 Surviving: 1897 (99.95%) Dropped: 1 (0.05%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:13,703 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-080_S104_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-080.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:13,971 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-080_S104_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-080.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1522 Surviving: 1522 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:13,971 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-081_S105_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-081.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:14,201 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-081_S105_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-081.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 637 Surviving: 637 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:14,201 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-082_S106_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-082.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:14,480 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-082_S106_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-082.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1196 Surviving: 1195 (99.92%) Dropped: 1 (0.08%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:14,480 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-083_S107_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-083.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:14,788 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-083_S107_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-083.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2432 Surviving: 2431 (99.96%) Dropped: 1 (0.04%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:14,788 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-084_S108_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-084.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:15,076 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-084_S108_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-084.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1857 Surviving: 1856 (99.95%) Dropped: 1 (0.05%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:15,076 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-085_S109_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-085.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:15,354 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-085_S109_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-085.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1782 Surviving: 1782 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:15,354 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-086_S110_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-086.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:15,646 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-086_S110_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-086.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2239 Surviving: 2236 (99.87%) Dropped: 3 (0.13%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:15,646 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-087_S111_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-087.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:15,951 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-087_S111_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-087.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2244 Surviving: 2242 (99.91%) Dropped: 2 (0.09%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:15,951 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-088_S112_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-088.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:16,239 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-088_S112_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-088.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1642 Surviving: 1642 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:16,239 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-089_S113_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-089.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:16,522 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-089_S113_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-089.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1362 Surviving: 1360 (99.85%) Dropped: 2 (0.15%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:16,522 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-090_S114_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-090.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:16,799 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-090_S114_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-090.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1635 Surviving: 1635 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:16,799 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-091_S115_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-091.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:17,119 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-091_S115_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-091.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2370 Surviving: 2370 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:17,119 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-092_S116_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-092.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:17,459 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-092_S116_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-092.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 3484 Surviving: 3484 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:17,459 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-093_S117_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-093.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:17,741 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-093_S117_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-093.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1820 Surviving: 1818 (99.89%) Dropped: 2 (0.11%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:17,741 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-094_S118_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-094.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:18,094 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-094_S118_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-094.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 3215 Surviving: 3215 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:18,094 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-095_S119_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-095.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:18,410 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-095_S119_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-095.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2292 Surviving: 2290 (99.91%) Dropped: 2 (0.09%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:18,410 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-096_S120_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-096.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:18,740 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-096_S120_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-096.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2653 Surviving: 2652 (99.96%) Dropped: 1 (0.04%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:18,741 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-097_S121_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-097.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:19,118 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-097_S121_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-097.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 5088 Surviving: 5087 (99.98%) Dropped: 1 (0.02%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:19,118 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-098_S122_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-098.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:19,497 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-098_S122_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-098.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 4348 Surviving: 4342 (99.86%) Dropped: 6 (0.14%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:19,497 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-099_S123_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-099.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:19,853 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-099_S123_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-099.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 4100 Surviving: 4099 (99.98%) Dropped: 1 (0.02%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:19,853 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-100_S124_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-100.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:20,238 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-100_S124_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-100.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 4264 Surviving: 4263 (99.98%) Dropped: 1 (0.02%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:20,238 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-101_S125_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-101.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:20,593 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-101_S125_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-101.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 3666 Surviving: 3660 (99.84%) Dropped: 6 (0.16%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:20,593 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-102_S126_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-102.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:20,927 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-102_S126_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-102.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 3351 Surviving: 3348 (99.91%) Dropped: 3 (0.09%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:20,927 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-103_S127_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-103.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:21,281 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-103_S127_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-103.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 4670 Surviving: 4667 (99.94%) Dropped: 3 (0.06%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:21,281 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-104_S128_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-104.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:21,591 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-104_S128_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-104.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2781 Surviving: 2781 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:21,591 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-105_S129_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-105.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:21,983 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-105_S129_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-105.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 5049 Surviving: 5047 (99.96%) Dropped: 2 (0.04%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:21,983 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-106_S130_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-106.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:22,337 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-106_S130_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-106.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 3683 Surviving: 3681 (99.95%) Dropped: 2 (0.05%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:22,337 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-107_S131_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-107.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:22,688 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-107_S131_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-107.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 4055 Surviving: 4050 (99.88%) Dropped: 5 (0.12%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:22,688 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-108_S132_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-108.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:23,028 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-108_S132_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-108.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 3015 Surviving: 3013 (99.93%) Dropped: 2 (0.07%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:23,028 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-109_S133_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-109.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:23,438 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-109_S133_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-109.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 5201 Surviving: 5198 (99.94%) Dropped: 3 (0.06%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:23,438 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-110_S134_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-110.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:23,858 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-110_S134_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-110.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 5613 Surviving: 5610 (99.95%) Dropped: 3 (0.05%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:23,858 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-111_S135_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-111.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:24,312 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-111_S135_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-111.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 6140 Surviving: 6134 (99.90%) Dropped: 6 (0.10%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:24,313 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-112_S136_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-112.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:24,699 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-112_S136_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-112.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 4706 Surviving: 4703 (99.94%) Dropped: 3 (0.06%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:24,699 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-113_S137_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-113.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:25,122 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-113_S137_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-113.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 5639 Surviving: 5637 (99.96%) Dropped: 2 (0.04%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:25,122 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-114_S138_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-114.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:25,626 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-114_S138_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-114.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 6833 Surviving: 6831 (99.97%) Dropped: 2 (0.03%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:25,626 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-115_S139_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-115.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:26,111 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-115_S139_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-115.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 8016 Surviving: 8013 (99.96%) Dropped: 3 (0.04%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:26,111 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-116_S140_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-116.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:26,527 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-116_S140_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-116.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 5526 Surviving: 5524 (99.96%) Dropped: 2 (0.04%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:26,527 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-117_S141_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-117.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:27,048 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-117_S141_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-117.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 9815 Surviving: 9806 (99.91%) Dropped: 9 (0.09%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:27,048 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-118_S142_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-118.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:27,629 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-118_S142_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-118.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 10931 Surviving: 10926 (99.95%) Dropped: 5 (0.05%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:27,629 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-119_S143_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-119.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:28,269 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-119_S143_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-119.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 12370 Surviving: 12361 (99.93%) Dropped: 9 (0.07%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:28,269 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-120_S144_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-120.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:28,932 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-120_S144_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-120.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 14059 Surviving: 14055 (99.97%) Dropped: 4 (0.03%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:28,932 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-121_S145_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-121.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:29,261 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-121_S145_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-121.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 3086 Surviving: 3083 (99.90%) Dropped: 3 (0.10%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:29,261 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-122_S146_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-122.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:29,635 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-122_S146_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-122.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 3613 Surviving: 3610 (99.92%) Dropped: 3 (0.08%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:29,635 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-123_S147_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-123.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:29,995 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-123_S147_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-123.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 3775 Surviving: 3770 (99.87%) Dropped: 5 (0.13%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:29,995 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-124_S148_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-124.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:30,408 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-124_S148_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-124.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 5158 Surviving: 5157 (99.98%) Dropped: 1 (0.02%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:30,409 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-125_S149_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-125.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:30,801 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-125_S149_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-125.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 4329 Surviving: 4326 (99.93%) Dropped: 3 (0.07%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:30,801 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-126_S150_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-126.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:31,202 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-126_S150_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-126.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 3983 Surviving: 3981 (99.95%) Dropped: 2 (0.05%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:31,202 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-127_S151_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-127.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:31,609 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-127_S151_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-127.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 5278 Surviving: 5273 (99.91%) Dropped: 5 (0.09%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:31,609 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-128_S152_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-128.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:31,976 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-128_S152_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-128.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 4370 Surviving: 4366 (99.91%) Dropped: 4 (0.09%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:31,977 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-129_S153_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-129.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:32,340 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-129_S153_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-129.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 4392 Surviving: 4391 (99.98%) Dropped: 1 (0.02%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:32,340 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-130_S154_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-130.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:32,726 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-130_S154_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-130.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 5021 Surviving: 5019 (99.96%) Dropped: 2 (0.04%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:32,726 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-131_S155_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-131.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:32,982 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-131_S155_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-131.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1110 Surviving: 1110 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:32,982 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-132_S156_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-132.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:33,395 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-132_S156_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-132.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 4699 Surviving: 4696 (99.94%) Dropped: 3 (0.06%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:33,395 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-133_S157_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-133.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:33,798 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-133_S157_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-133.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 4948 Surviving: 4942 (99.88%) Dropped: 6 (0.12%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:33,798 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-134_S158_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-134.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:34,200 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-134_S158_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-134.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 5120 Surviving: 5118 (99.96%) Dropped: 2 (0.04%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:34,200 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-135_S159_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-135.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:34,562 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-135_S159_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-135.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 4082 Surviving: 4079 (99.93%) Dropped: 3 (0.07%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:34,562 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-136_S160_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-136.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:34,933 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-136_S160_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-136.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 4679 Surviving: 4678 (99.98%) Dropped: 1 (0.02%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:34,933 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-137_S161_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-137.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:35,286 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-137_S161_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-137.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 3549 Surviving: 3545 (99.89%) Dropped: 4 (0.11%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:35,286 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-138_S162_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-138.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:35,641 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-138_S162_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-138.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 3917 Surviving: 3914 (99.92%) Dropped: 3 (0.08%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:35,641 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-139_S163_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-139.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:35,916 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-139_S163_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-139.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1830 Surviving: 1829 (99.95%) Dropped: 1 (0.05%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:35,916 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-140_S164_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-140.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:36,296 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-140_S164_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-140.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 4414 Surviving: 4408 (99.86%) Dropped: 6 (0.14%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:36,296 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-141_S165_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-141.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:36,607 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-141_S165_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-141.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2760 Surviving: 2758 (99.93%) Dropped: 2 (0.07%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:36,607 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-142_S166_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-142.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:36,902 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-142_S166_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-142.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2605 Surviving: 2603 (99.92%) Dropped: 2 (0.08%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:36,902 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-143_S167_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-143.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:37,219 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-143_S167_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-143.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2858 Surviving: 2855 (99.90%) Dropped: 3 (0.10%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:37,219 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-144_S168_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-144.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:37,557 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-144_S168_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-144.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 3310 Surviving: 3309 (99.97%) Dropped: 1 (0.03%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:37,557 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-145_S169_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-145.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:37,788 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-145_S169_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-145.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 877 Surviving: 877 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:37,788 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-146_S170_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-146.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:38,083 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-146_S170_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-146.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2423 Surviving: 2422 (99.96%) Dropped: 1 (0.04%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:38,083 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-147_S171_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-147.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:38,397 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-147_S171_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-147.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2952 Surviving: 2949 (99.90%) Dropped: 3 (0.10%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:38,397 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-148_S172_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-148.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:38,704 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-148_S172_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-148.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2492 Surviving: 2490 (99.92%) Dropped: 2 (0.08%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:38,704 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-149_S173_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-149.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:38,998 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-149_S173_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-149.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2387 Surviving: 2385 (99.92%) Dropped: 2 (0.08%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:38,998 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-150_S174_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-150.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:39,366 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-150_S174_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-150.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 4228 Surviving: 4223 (99.88%) Dropped: 5 (0.12%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:39,366 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-151_S175_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-151.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:39,707 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-151_S175_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-151.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 3664 Surviving: 3660 (99.89%) Dropped: 4 (0.11%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:39,707 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-152_S176_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-152.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:40,035 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-152_S176_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-152.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 3105 Surviving: 3103 (99.94%) Dropped: 2 (0.06%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:40,035 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-153_S177_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-153.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:40,334 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-153_S177_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-153.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2873 Surviving: 2871 (99.93%) Dropped: 2 (0.07%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:40,334 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-154_S178_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-154.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:40,671 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-154_S178_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-154.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 3395 Surviving: 3394 (99.97%) Dropped: 1 (0.03%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:40,672 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-155_S179_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-155.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:41,015 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-155_S179_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-155.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 3637 Surviving: 3629 (99.78%) Dropped: 8 (0.22%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:41,015 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-156_S180_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-156.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:41,374 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-156_S180_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-156.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 3815 Surviving: 3812 (99.92%) Dropped: 3 (0.08%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:41,374 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-157_S181_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-157.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:41,644 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-157_S181_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-157.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2049 Surviving: 2046 (99.85%) Dropped: 3 (0.15%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:41,645 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-158_S182_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-158.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:41,986 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-158_S182_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-158.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 3836 Surviving: 3834 (99.95%) Dropped: 2 (0.05%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:41,986 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-159_S183_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-159.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:42,289 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-159_S183_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-159.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2501 Surviving: 2498 (99.88%) Dropped: 3 (0.12%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:42,289 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-160_S184_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-160.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:42,447 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-160_S184_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-160.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 6 Surviving: 6 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:42,447 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-161_S185_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-161.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:42,806 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-161_S185_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-161.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 3984 Surviving: 3982 (99.95%) Dropped: 2 (0.05%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:42,806 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-162_S186_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-162.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:43,129 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-162_S186_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-162.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 3220 Surviving: 3219 (99.97%) Dropped: 1 (0.03%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:43,129 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-163_S187_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-163.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:43,424 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-163_S187_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-163.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2307 Surviving: 2307 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:43,424 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-164_S188_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-164.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:43,705 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-164_S188_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-164.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1400 Surviving: 1398 (99.86%) Dropped: 2 (0.14%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:43,705 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-165_S189_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-165.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:44,029 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-165_S189_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-165.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 3511 Surviving: 3509 (99.94%) Dropped: 2 (0.06%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:44,029 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-166_S190_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-166.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:44,188 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-166_S190_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-166.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 13 Surviving: 13 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:44,188 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-167_S191_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-167.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:44,346 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-167_S191_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-167.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 10 Surviving: 10 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:44,347 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-168_S192_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-168.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:44,661 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-168_S192_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-168.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 3319 Surviving: 3318 (99.97%) Dropped: 1 (0.03%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:44,661 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-169_S193_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-169.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:44,825 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-169_S193_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-169.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 29 Surviving: 29 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:44,825 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-170_S194_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-170.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:45,150 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-170_S194_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-170.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2738 Surviving: 2736 (99.93%) Dropped: 2 (0.07%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:45,150 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-171_S195_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-171.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:45,465 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-171_S195_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-171.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2635 Surviving: 2634 (99.96%) Dropped: 1 (0.04%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:45,465 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-172_S196_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-172.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:45,865 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-172_S196_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-172.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 4817 Surviving: 4814 (99.94%) Dropped: 3 (0.06%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:45,865 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-173_S197_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-173.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:46,261 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-173_S197_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-173.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 4829 Surviving: 4826 (99.94%) Dropped: 3 (0.06%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:46,261 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-174_S198_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-174.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:46,646 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-174_S198_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-174.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 4517 Surviving: 4515 (99.96%) Dropped: 2 (0.04%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:46,646 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-175_S199_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-175.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:47,045 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-175_S199_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-175.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 4857 Surviving: 4853 (99.92%) Dropped: 4 (0.08%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:47,045 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-176_S200_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-176.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:47,369 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-176_S200_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-176.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2586 Surviving: 2586 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:47,369 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-177_S201_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-177.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:47,678 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-177_S201_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-177.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2636 Surviving: 2634 (99.92%) Dropped: 2 (0.08%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:47,678 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-178_S202_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-178.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:48,039 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-178_S202_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-178.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 4856 Surviving: 4855 (99.98%) Dropped: 1 (0.02%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:48,039 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-179_S203_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-179.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:48,331 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-179_S203_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-179.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 2258 Surviving: 2258 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:48,332 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-180_S204_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-180.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:48,724 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-180_S204_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-180.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 4830 Surviving: 4826 (99.92%) Dropped: 4 (0.08%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:48,724 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-181_S205_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-181.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:49,061 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-181_S205_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-181.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 3180 Surviving: 3180 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:49,061 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-182_S206_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-182.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:49,388 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-182_S206_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-182.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 3131 Surviving: 3129 (99.94%) Dropped: 2 (0.06%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:49,388 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-183_S207_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-183.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:49,738 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-183_S207_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-183.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 3634 Surviving: 3631 (99.92%) Dropped: 3 (0.08%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:49,738 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-184_S208_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-184.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:50,170 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-184_S208_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-184.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 6021 Surviving: 6015 (99.90%) Dropped: 6 (0.10%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:50,171 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-185_S209_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-185.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:50,438 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-185_S209_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-185.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 1276 Surviving: 1275 (99.92%) Dropped: 1 (0.08%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:50,438 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-186_S210_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-186.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:50,803 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-186_S210_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-186.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 3837 Surviving: 3836 (99.97%) Dropped: 1 (0.03%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:50,803 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-187_S211_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-187.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:51,132 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-187_S211_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-187.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 3089 Surviving: 3086 (99.90%) Dropped: 3 (0.10%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:51,132 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-188_S212_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-188.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:51,545 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-188_S212_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-188.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 5753 Surviving: 5752 (99.98%) Dropped: 1 (0.02%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:51,545 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-189_S213_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-189.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:51,871 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-189_S213_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-189.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 3093 Surviving: 3093 (100.00%) Dropped: 0 (0.00%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:51,871 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-190_S214_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-190.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:52,273 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-190_S214_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-190.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 5019 Surviving: 5016 (99.94%) Dropped: 3 (0.06%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:52,273 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-191_S215_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-191.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:52,695 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-191_S215_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-191.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 5957 Surviving: 5954 (99.95%) Dropped: 3 (0.05%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:52,695 - INFO] Trying to run
trimmomatic SE -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-192_S216_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-192.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
[2023-04-01 05:13:53,071 - INFO] TrimmomaticSE: Started with arguments:
 -threads 16 -phred33 /nephele_data/outputs/cutadapt_trimmed/zebra-192_S216_L001_R1_001.fastq.gz /nephele_data/outputs/qtrimmed_seqs/zebra-192.fastq.gz LEADING:3 TRAILING:3 SLIDINGWINDOW:4:12 MINLEN:30 AVGQUAL:0
Input Reads: 5276 Surviving: 5275 (99.98%) Dropped: 1 (0.02%)
TrimmomaticSE: Completed successfully

[2023-04-01 05:13:53,071 - INFO] Quality trimming complete, see /nephele_data/outputs/multiqc_input/trimmo.log.
[2023-04-01 05:13:53,071 - INFO] Trying to run multiqc on /nephele_data/outputs/multiqc_input/.
[2023-04-01 05:13:53,071 - INFO] Linking logfile to multiqc inputs directory, /nephele_data/outputs/multiqc_input/.
[2023-04-01 05:13:53,071 - INFO] Finished linking.

[2023-04-01 05:14:44,473 - INFO] 
  /// MultiQC 🔍 | v1.13.dev0

|           multiqc | MultiQC Version v1.14 now available!
|           multiqc | Report title: GIW23-testRun1
|           multiqc | Search path : /nephele_data/outputs/multiqc_input
|         searching | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 649/649  
|            fastqc | Found 216 reports
|          cutadapt | Found 216 reports
|       trimmomatic | Found 216 logs
|           multiqc | Compressing plot data
|           multiqc | Report      : nephele_data/outputs/GIW23-testRun1_multiqc_report.html
|           multiqc | Data        : nephele_data/outputs/GIW23-testRun1_multiqc_report_data
|           multiqc | MultiQC complete
|           multiqc | 10 flat-image plots used in the report due to large sample numbers
|           multiqc | To force interactive plots, use the '--interactive' flag. 
See the documentation.

[2023-04-01 05:14:44,473 - INFO] Finished multiqc.

[2023-04-01 05:14:44,473 - INFO] QC pipeline complete.
[2023-04-01 05:14:44,473 - INFO] 0