This is cutadapt 4.1 with Python 3.8.13 Command line parameters: --cores 16 --match-read-wildcards --overlap 3 --error-rate 0.1 -g GTGYCAGCMGCCGCGGTAA -o /nephele_data/outputs/cutadapt_trimmed/zebra-020_S44_L001_R1_001.fastq.gz /nephele_data/inputs/zebra-020_S44_L001_R1_001.fastq Processing single-end reads on 16 cores ... Finished in 0.05 s (18 µs/read; 3.38 M reads/minute). === Summary === Total reads processed: 2,788 Reads with adapters: 2,746 (98.5%) Reads written (passing filters): 2,788 (100.0%) Total basepairs processed: 836,400 bp Total written (filtered): 784,228 bp (93.8%) === Adapter 1 === Sequence: GTGYCAGCMGCCGCGGTAA; Type: regular 5'; Length: 19; Trimmed: 2746 times Minimum overlap: 3 No. of allowed errors: 1-9 bp: 0; 10-19 bp: 1 Overview of removed sequences length count expect max.err error counts 18 5 0.0 1 3 2 19 2738 0.0 1 2513 225 20 3 0.0 1 1 2