FastQCFastQC Report
Wed 30 Nov 2022
4061-JW38trimR_R2.fq

Summary

[OK]Basic Statistics

MeasureValue
Filename4061-JW38trimR_R2.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences105
Sequences flagged as poor quality0
Sequence length232
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCATAGGCTGTCTCTTATACACATCTGACGCTGCCGACGAACTTAAGC65.714285714285714No Hit
TTCCGTAGGCTGTCTCTTATACACATCTGACGCTGCCGACGAACTTAAGC65.714285714285714No Hit
CTCCGTAGGCTGTCTCTTATACACATCTGACGCTGCCGACGAACTTAAGC43.8095238095238098No Hit
ATCCATAGGCTGTCTCTTATACACATCTGACGCTGCCGACGAACTTAAGC43.8095238095238098No Hit
CCCCATAGGCTGTCTCTTATACACATCTGACGCTGCCGACGAACTTAAGC32.857142857142857No Hit
TTCCATAGGCTGTCTCTTATACACATCTGACGCTGCCGACGAACTTAAGC32.857142857142857No Hit
AGGAGCTAAAAAATCTCAGGGAAATTTAAATTTGTTCTCTGCATCCCGTA21.9047619047619049No Hit
CCCCGTAGGCTGTCTCTTATACACATCTGACGCTGCCGACGAACCTAAGC21.9047619047619049No Hit
ATCCGTAGGCTGTCTCTTATACACATCTGACGCTGCCGACGAACTTAAGC21.9047619047619049No Hit
CCCCGTAGGCTGTCTCTTATACACATCTGACGCTGCCGACGAACTTAAGC21.9047619047619049No Hit
AATCCATGCTGCATTCCGTAGGCTGTCTCTTATACACATCTGACGCTGCC21.9047619047619049No Hit
CCCAGCCGCCCGTAGGCTGTCTCTTATACACATCTGACGCTGCCGACGAA21.9047619047619049No Hit
TAATCCATGCAGCCGTCCGTAGGCTGTCTCTTATACACATCTGACGCTGC21.9047619047619049No Hit
TCCCATAGGCTGTCTCTTATACACATCTGACGCTGCCGACGAACTTAAGC21.9047619047619049No Hit
GTCCATAGGCTGTCTCTTATACACATCTGACGCTGCCGACGAACTTAAGC21.9047619047619049No Hit
ACACATCTGACGCTGCCGACGATGCAATCCATAGGCTGTCTCTTATACAC21.9047619047619049No Hit
AATCCATGCAGCAATCCATATCCTGTCTCTTATACACATCTGACGCTGCC10.9523809523809524No Hit
TAATCCATGCAGCGCTCCATAGGCTGTCTCTTATACACATCTGACGCTGC10.9523809523809524No Hit
TACACCTCAACCCACACATATTTGCACTGCCTCCCATAGGCTGTCTCTTA10.9523809523809524No Hit
GCCCTTAGGCTGGCACTTTTACACATCTGACGCTCTCGACAGACTCAGGT10.9523809523809524No Hit
GCCATCCATAGGCTGTCTCTTATACACATCTGACGCTGCCGACGAACTTA10.9523809523809524No Hit
CCTTTTCGATGCCCTAGCTTTCTCACCGAGTCTTCAGGTACGATCTAGAG10.9523809523809524No Hit
ACACATCTGACGCTGCCGACGATGCAGCGCTCCATAGGCTGTCTCTTATA10.9523809523809524No Hit
ATACACATCTGACGCAGCCGACGAGCTTAAGCGTCAGAAACGGCCCAGAA10.9523809523809524No Hit
CTGCTGCCCCCCATAGGCTGTCGCTTATACACATCTGACGCTGCCGACGA10.9523809523809524No Hit
AATCCATGCAGCCATCCATAGGCTGTCTCTTATACACATCTGACGCTGCC10.9523809523809524No Hit
CTGTCTCTCATACACATCTGACGCTGCTGACGGACATAAGCGCGCCAATC10.9523809523809524No Hit
TATTCCAGCCCGCCACTCGTACGCTCTCTAGTATGCACATCTGACGCTGC10.9523809523809524No Hit
TACTCCATGCAGCCATCCATAGGCTGTCTCTTATACACATCTGACGCTGC10.9523809523809524No Hit
AGTCCGTAGGCTGTCTCTTATACACATCTGACGCTGCCGACGAACTTAAG10.9523809523809524No Hit
CTCTTTCCCTACACGACGCTCTTCCGATCTGCAGCCGTCCGTAGGCTGTC10.9523809523809524Illumina Single End PCR Primer 1 (100% over 30bp)
GATGTTGGCTCACCACGCAGTCGGGCCTAAACGTCGGTGTCGGCCCAGGA10.9523809523809524No Hit
CCTCCATGCAGCCTTCCGTAGGCTGTCTCTTCTACACATCTGACGCAGCC10.9523809523809524No Hit
GCCATCCATAGGCTGTCTCTTATACACATCTGGCGCGGCCGACGCCCTTT10.9523809523809524No Hit
CTCCATAGGCTGTCTCTTATACACATCTGACGCTGCCGACGAACTTATGT10.9523809523809524No Hit
CTCCGTAGTCTGTCTCTTATACACATCTGACGCTGCCGACGAACTTAGGC10.9523809523809524No Hit
ACCCGTAGGCTGTCTCTTATACACATCTGACGCTGCCGACGAACTTAAGC10.9523809523809524No Hit
CCTCATAGGCTGTCTCTTATACACATCTGACGCTGCCGTCGACCTTAAGC10.9523809523809524No Hit
TAATCCATGCAGCCCTCCATAGGCTGTCTCTTATACACATCTGACGCGGC10.9523809523809524No Hit
AATCCATGCTGCCTTCCGTAGGCTGTCTCTTATACACATCTGACGCTGCC10.9523809523809524No Hit
TAATCCATGCTGCATCCCATAGGCTGTCTCTTATACACATCTGACGCTGC10.9523809523809524No Hit
CCTTTTCGCTGGACATGCTCTCGCAATGAGGTGAGCTGCAATGTCCAGGT10.9523809523809524No Hit
TGCAGCCTCCCATAGGCTGTCTCTTATACACATCTGACGCTGCCGACGAA10.9523809523809524No Hit
GCGTTCCGTAGGCTGTCTCTTATACACATCTGACGCTGCCGACGAACTTA10.9523809523809524No Hit
ATCCATGCTGCCCCCCGTAGGCTGTCTCTTATACACATCTGACGCTGCCG10.9523809523809524No Hit
ATCCATGCTGCCCCCCATAGGCTGTCTCTTATACACATCTGACGCTGCCG10.9523809523809524No Hit
CCTTAGGCTGTCTCTTATTCACATGCGACGCTGTCGGCGCACTTCAACGT10.9523809523809524No Hit
TGCAGCGGCCCGTAGGCTGTCTCTTATACACATCTGACGCTGCCGACGAA10.9523809523809524No Hit
GCTGGTTGGTACCCACGCTGTGGTTCCTCAGCTTCAGCTGGCGGCCAGGA10.9523809523809524No Hit
TCCATGCTGCCCCCCATAGGCTGTCTCTTATACACATCTGACGCTGCCGA10.9523809523809524No Hit
TGCTGCATCCCGTAGGCTGTCTCTTATACACATCTGACGCTGCCGACGAA10.9523809523809524No Hit
CCTGATAGCCTGCCTCTTATACGCGTCTGACCGTGAGGACTAGCTCAGGA10.9523809523809524No Hit
AAGCAGCCCGTAGGCTGTCTCTTATACACATCTGACGCTGCCGACGAACT10.9523809523809524No Hit
ATCGATAGGCTGCCTCTTATACACATCTGACGCTGCCGTCGAAACTAAGT10.9523809523809524No Hit
TAATCCATGCAGCCTCCCATAGGCTGTCTCTTATACACATCTGACGCTGC10.9523809523809524No Hit
GTCCGTAGGCTGTCTCTTATACACATCTGACGCTGCCGACGAACTCAAGC10.9523809523809524No Hit
CTCTTTCCCTACACGACGCTCTTCCGATCTGCTGCCCTCCATAGCCTGTC10.9523809523809524Illumina Single End PCR Primer 1 (100% over 30bp)
GTCCGTAGGCTGTCTCTTATACACATCTGACGCTGCCGACGAACTTAAGC10.9523809523809524No Hit
ACCCATAGGCTGTCTCTTATACACATCTGACGCTGCCGACGAACTTAAGC10.9523809523809524No Hit
AAGCGTCCCATAGGCTGTCTCTTATACACATCTGACGCTGCCGACGAACT10.9523809523809524No Hit
CCAGAGTGTTCCCCACGTATACATGCGAGAGTGTCAGTTCTCGTAAAGAA10.9523809523809524No Hit
GCTGTTCGATCCCCACCCTTTCGTGCTGAAGCGTCCGTTACTATCCAGCA10.9523809523809524No Hit
TAATCCATGCAGCCCTCCATAGGCTGTCTCTTATACACATCTGACGCTGC10.9523809523809524No Hit
TGCCAGAAATCCGCGTGACGATCTCTCCCTGCTGCATCCCGTAGGCTGTC10.9523809523809524No Hit
TGCCAGAAATCCGCGTGACGATCTCTCCCTGCTGCATCCCGTAGGCTGTA10.9523809523809524No Hit
TAATCCATGCTGCCGCCCGTAGGCTGTCTCTTATACACATCTGACGCTGC10.9523809523809524No Hit
CCTTTTCGCTCGCCCAGCTTTCGCACTGGATCTATCGGTCATGTCCAGGC10.9523809523809524No Hit
CCGGCTGGCTCCCATACACTTCTCACCCCAGCGTCAGAACCGAGCCAGAT10.9523809523809524No Hit
CTCTTTCCCTACACGACGCTCTTCCGATCTGCTGCCCTCCATAGGCTGTC10.9523809523809524Illumina Single End PCR Primer 1 (100% over 30bp)
CTCTTTCCCTACACAACGCTCTTCCGATCTGCGTCACCCCATAGGCTGTC10.9523809523809524Illumina Single End PCR Primer 1 (96% over 30bp)
CCTGTTTGCTGGCCATGATTTCTTACTGAGTCGTCAGGTATCGACCAGAA10.9523809523809524No Hit
CCGCATTGTTCCGTACGCTTTCTCGTATACGCATCAGACCTTGCCGACGG10.9523809523809524No Hit
TGCCAGAAATCCGCGTGACAATCTCTCCCTGCTGCACTCCATAGGCTGTC10.9523809523809524No Hit
TTGCAGCGTCCCGCAGGCTGTCTCTTATACACATCTGACGCTGCCGACGA10.9523809523809524No Hit
TGCTGCCCCCCGTAGGCTGTCTCTTATACACATCTGACGCTGCCGACGAA10.9523809523809524No Hit

[FAIL]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers